miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11314 5' -50.9 NC_003084.1 + 7608 1.15 0.002338
Target:  5'- uGCCAACUGAUGAUGCCCAACUCGAGCa -3'
miRNA:   3'- -CGGUUGACUACUACGGGUUGAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 2198 0.77 0.520902
Target:  5'- gGCCAACUGGUGAUaCUCAACUaGGGUu -3'
miRNA:   3'- -CGGUUGACUACUAcGGGUUGAgCUCG- -5'
11314 5' -50.9 NC_003084.1 + 105765 0.75 0.616922
Target:  5'- gGCCGACUGGUGAUGCUaaaugaGGgUgGAGUg -3'
miRNA:   3'- -CGGUUGACUACUACGGg-----UUgAgCUCG- -5'
11314 5' -50.9 NC_003084.1 + 22956 0.75 0.648373
Target:  5'- cGCCAGCUGAuuguuguUGA-GCgCCAACaUCGGGUa -3'
miRNA:   3'- -CGGUUGACU-------ACUaCG-GGUUG-AGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 47566 0.74 0.681851
Target:  5'- aGCCAACUGcaauAUGGUGCUCAcgaaggaggaGCUgaaCGAGCu -3'
miRNA:   3'- -CGGUUGAC----UACUACGGGU----------UGA---GCUCG- -5'
11314 5' -50.9 NC_003084.1 + 1236 0.74 0.681851
Target:  5'- gGCCGACUGGUGAUGCUaaaugaGGgUgGAGUu -3'
miRNA:   3'- -CGGUUGACUACUACGGg-----UUgAgCUCG- -5'
11314 5' -50.9 NC_003084.1 + 74195 0.74 0.703234
Target:  5'- uGUCGguuucACUGGUGAccaagcGCgCCAACUCGGGCg -3'
miRNA:   3'- -CGGU-----UGACUACUa-----CG-GGUUGAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 45920 0.73 0.745104
Target:  5'- cGCCGACgagGAUGAUGUCgAuggUGAGCa -3'
miRNA:   3'- -CGGUUGa--CUACUACGGgUugaGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 19223 0.72 0.775378
Target:  5'- aGCCAAC-GGUuucGGUGUCCAAUaCGGGCa -3'
miRNA:   3'- -CGGUUGaCUA---CUACGGGUUGaGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 65015 0.71 0.82282
Target:  5'- cGCCGACaGAaaguUGAgcgucaaaucGCCCAgaaACUCGGGCg -3'
miRNA:   3'- -CGGUUGaCU----ACUa---------CGGGU---UGAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 75300 0.71 0.840502
Target:  5'- gGCCAAC--GUGG-GCuUCAGCUCGAGCc -3'
miRNA:   3'- -CGGUUGacUACUaCG-GGUUGAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 9320 0.71 0.854866
Target:  5'- cGCCAcuacaaccaucaaaGCUGGUagaccGGUgcGCCCAGCUCG-GCa -3'
miRNA:   3'- -CGGU--------------UGACUA-----CUA--CGGGUUGAGCuCG- -5'
11314 5' -50.9 NC_003084.1 + 59194 0.71 0.857334
Target:  5'- gGCCAcaGCUGGg---GCCCGGgUUGGGCu -3'
miRNA:   3'- -CGGU--UGACUacuaCGGGUUgAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 64525 0.7 0.865411
Target:  5'- cCUAAC-GGUGGaccUGCCCAGCUCGAu- -3'
miRNA:   3'- cGGUUGaCUACU---ACGGGUUGAGCUcg -5'
11314 5' -50.9 NC_003084.1 + 97369 0.7 0.865411
Target:  5'- aCCAACUGGUGAaacuguugaGCCCGGCcugcaCGAGUu -3'
miRNA:   3'- cGGUUGACUACUa--------CGGGUUGa----GCUCG- -5'
11314 5' -50.9 NC_003084.1 + 102409 0.7 0.873251
Target:  5'- uGCCuguuuGCaGGUGGgcuuguUGCCCGACUCcAGCa -3'
miRNA:   3'- -CGGu----UGaCUACU------ACGGGUUGAGcUCG- -5'
11314 5' -50.9 NC_003084.1 + 21288 0.7 0.880849
Target:  5'- cGCuCGACUcg-GA-GCCCGACUgGGGCa -3'
miRNA:   3'- -CG-GUUGAcuaCUaCGGGUUGAgCUCG- -5'
11314 5' -50.9 NC_003084.1 + 105651 0.7 0.888199
Target:  5'- aGUCGGCcGA-GGUGUCCAgguaGCUUGGGCa -3'
miRNA:   3'- -CGGUUGaCUaCUACGGGU----UGAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 97545 0.7 0.893193
Target:  5'- aCCAcCUGgcGGUGCCCcucaaagucagccaAACUCGuGCa -3'
miRNA:   3'- cGGUuGACuaCUACGGG--------------UUGAGCuCG- -5'
11314 5' -50.9 NC_003084.1 + 95434 0.7 0.895295
Target:  5'- uUCAACg---GA-GCCCAACUCGAGg -3'
miRNA:   3'- cGGUUGacuaCUaCGGGUUGAGCUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.