Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11314 | 5' | -50.9 | NC_003084.1 | + | 39979 | 0.66 | 0.982923 |
Target: 5'- gGCgAGCUGGUGGagcUGCaaAACUCGAc- -3' miRNA: 3'- -CGgUUGACUACU---ACGggUUGAGCUcg -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 58716 | 0.66 | 0.97844 |
Target: 5'- gGUCAACgGAaGGUGCCCAAgUUuaaGGGUa -3' miRNA: 3'- -CGGUUGaCUaCUACGGGUUgAG---CUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 31820 | 0.66 | 0.975897 |
Target: 5'- aGCCcGC-GGUGGUG-CCAAC-CGAGUc -3' miRNA: 3'- -CGGuUGaCUACUACgGGUUGaGCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 13411 | 0.66 | 0.975631 |
Target: 5'- aCCAACagugaccUGGUGGUGCUCAaaaccccgGCUCGAa- -3' miRNA: 3'- cGGUUG-------ACUACUACGGGU--------UGAGCUcg -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 71832 | 0.66 | 0.97844 |
Target: 5'- cGCCcgaauucaAugUGAUGAaGCCCGAC-CGAuGUc -3' miRNA: 3'- -CGG--------UugACUACUaCGGGUUGaGCU-CG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 15636 | 0.66 | 0.975897 |
Target: 5'- uCCAACac---GUGCuCCAACUUGAGCu -3' miRNA: 3'- cGGUUGacuacUACG-GGUUGAGCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 43719 | 0.66 | 0.975897 |
Target: 5'- gGUCAAcCUGAUccucGAgugGUCCGAacgcCUCGAGCg -3' miRNA: 3'- -CGGUU-GACUA----CUa--CGGGUU----GAGCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 74447 | 0.66 | 0.973141 |
Target: 5'- cGCCAgcgcuacagugaACUGGUGAUGCCgcugggaAACaUUGAGg -3' miRNA: 3'- -CGGU------------UGACUACUACGGg------UUG-AGCUCg -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 89312 | 0.66 | 0.984694 |
Target: 5'- aCgAGCUGGUGAUGCgguucacUCAACguaCGAGUc -3' miRNA: 3'- cGgUUGACUACUACG-------GGUUGa--GCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 73788 | 0.66 | 0.982923 |
Target: 5'- cGCgAGCUGGUGGa--CCAG-UCGGGCg -3' miRNA: 3'- -CGgUUGACUACUacgGGUUgAGCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 38763 | 0.66 | 0.982923 |
Target: 5'- cGCUuAGCUGAaGG-GCCCAuuugcgcucCUCGGGCu -3' miRNA: 3'- -CGG-UUGACUaCUaCGGGUu--------GAGCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 59038 | 0.66 | 0.980779 |
Target: 5'- uCCGGCgaaGGUGAagguaucgaGCCCAACcCGGGCc -3' miRNA: 3'- cGGUUGa--CUACUa--------CGGGUUGaGCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 49916 | 0.66 | 0.984882 |
Target: 5'- aCCAccACUGGUGua--CCAACUUGGGUu -3' miRNA: 3'- cGGU--UGACUACuacgGGUUGAGCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 16943 | 0.67 | 0.9559 |
Target: 5'- uCCAcCUccGAUGA-GCCCGAggCGAGCg -3' miRNA: 3'- cGGUuGA--CUACUaCGGGUUgaGCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 23592 | 0.67 | 0.9559 |
Target: 5'- aCCAcuuggcGCUGAUGAUcaUCAGCgUCGAGCu -3' miRNA: 3'- cGGU------UGACUACUAcgGGUUG-AGCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 58909 | 0.67 | 0.959833 |
Target: 5'- gGUCAACgugGAUGAaaUGCCaCAACguUCGcGCa -3' miRNA: 3'- -CGGUUGa--CUACU--ACGG-GUUG--AGCuCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 55485 | 0.67 | 0.963517 |
Target: 5'- uCCAACUGgcGGUGCaaauuuugCAGCUcCGAGUc -3' miRNA: 3'- cGGUUGACuaCUACGg-------GUUGA-GCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 4839 | 0.67 | 0.966959 |
Target: 5'- aCCAACcGuauUGGc-CCCAGCUUGAGCg -3' miRNA: 3'- cGGUUGaCu--ACUacGGGUUGAGCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 9791 | 0.67 | 0.9559 |
Target: 5'- cGCCAACcGAguccgGUCCGucuucCUCGAGCu -3' miRNA: 3'- -CGGUUGaCUacua-CGGGUu----GAGCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 87101 | 0.67 | 0.970165 |
Target: 5'- cCCAACcGAUGGUGCUCGAUgaacagUUGcAGCu -3' miRNA: 3'- cGGUUGaCUACUACGGGUUG------AGC-UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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