miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11314 5' -50.9 NC_003084.1 + 1236 0.74 0.681851
Target:  5'- gGCCGACUGGUGAUGCUaaaugaGGgUgGAGUu -3'
miRNA:   3'- -CGGUUGACUACUACGGg-----UUgAgCUCG- -5'
11314 5' -50.9 NC_003084.1 + 2198 0.77 0.520902
Target:  5'- gGCCAACUGGUGAUaCUCAACUaGGGUu -3'
miRNA:   3'- -CGGUUGACUACUAcGGGUUGAgCUCG- -5'
11314 5' -50.9 NC_003084.1 + 4839 0.67 0.966959
Target:  5'- aCCAACcGuauUGGc-CCCAGCUUGAGCg -3'
miRNA:   3'- cGGUUGaCu--ACUacGGGUUGAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 7608 1.15 0.002338
Target:  5'- uGCCAACUGAUGAUGCCCAACUCGAGCa -3'
miRNA:   3'- -CGGUUGACUACUACGGGUUGAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 9320 0.71 0.854866
Target:  5'- cGCCAcuacaaccaucaaaGCUGGUagaccGGUgcGCCCAGCUCG-GCa -3'
miRNA:   3'- -CGGU--------------UGACUA-----CUA--CGGGUUGAGCuCG- -5'
11314 5' -50.9 NC_003084.1 + 9791 0.67 0.9559
Target:  5'- cGCCAACcGAguccgGUCCGucuucCUCGAGCu -3'
miRNA:   3'- -CGGUUGaCUacua-CGGGUu----GAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 13411 0.66 0.975631
Target:  5'- aCCAACagugaccUGGUGGUGCUCAaaaccccgGCUCGAa- -3'
miRNA:   3'- cGGUUG-------ACUACUACGGGU--------UGAGCUcg -5'
11314 5' -50.9 NC_003084.1 + 14654 0.69 0.926841
Target:  5'- gGCCGcGCUGA-GAUGUUCAGCuucauagucgUCGGGCc -3'
miRNA:   3'- -CGGU-UGACUaCUACGGGUUG----------AGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 15636 0.66 0.975897
Target:  5'- uCCAACac---GUGCuCCAACUUGAGCu -3'
miRNA:   3'- cGGUUGacuacUACG-GGUUGAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 16943 0.67 0.9559
Target:  5'- uCCAcCUccGAUGA-GCCCGAggCGAGCg -3'
miRNA:   3'- cGGUuGA--CUACUaCGGGUUgaGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 19223 0.72 0.775378
Target:  5'- aGCCAAC-GGUuucGGUGUCCAAUaCGGGCa -3'
miRNA:   3'- -CGGUUGaCUA---CUACGGGUUGaGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 21288 0.7 0.880849
Target:  5'- cGCuCGACUcg-GA-GCCCGACUgGGGCa -3'
miRNA:   3'- -CG-GUUGAcuaCUaCGGGUUGAgCUCG- -5'
11314 5' -50.9 NC_003084.1 + 22956 0.75 0.648373
Target:  5'- cGCCAGCUGAuuguuguUGA-GCgCCAACaUCGGGUa -3'
miRNA:   3'- -CGGUUGACU-------ACUaCG-GGUUG-AGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 23592 0.67 0.9559
Target:  5'- aCCAcuuggcGCUGAUGAUcaUCAGCgUCGAGCu -3'
miRNA:   3'- cGGU------UGACUACUAcgGGUUG-AGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 25327 0.68 0.932349
Target:  5'- gGCCcuACcGAcGAUGCCCGACacgguggCGGGCc -3'
miRNA:   3'- -CGGu-UGaCUaCUACGGGUUGa------GCUCG- -5'
11314 5' -50.9 NC_003084.1 + 30405 0.69 0.915021
Target:  5'- gGCCGGaUGc-GGUGCaccuCCAACUCGGGCa -3'
miRNA:   3'- -CGGUUgACuaCUACG----GGUUGAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 31820 0.66 0.975897
Target:  5'- aGCCcGC-GGUGGUG-CCAAC-CGAGUc -3'
miRNA:   3'- -CGGuUGaCUACUACgGGUUGaGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 38763 0.66 0.982923
Target:  5'- cGCUuAGCUGAaGG-GCCCAuuugcgcucCUCGGGCu -3'
miRNA:   3'- -CGG-UUGACUaCUaCGGGUu--------GAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 39979 0.66 0.982923
Target:  5'- gGCgAGCUGGUGGagcUGCaaAACUCGAc- -3'
miRNA:   3'- -CGgUUGACUACU---ACGggUUGAGCUcg -5'
11314 5' -50.9 NC_003084.1 + 43719 0.66 0.975897
Target:  5'- gGUCAAcCUGAUccucGAgugGUCCGAacgcCUCGAGCg -3'
miRNA:   3'- -CGGUU-GACUA----CUa--CGGGUU----GAGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.