miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11314 5' -50.9 NC_003084.1 + 59038 0.66 0.980779
Target:  5'- uCCGGCgaaGGUGAagguaucgaGCCCAACcCGGGCc -3'
miRNA:   3'- cGGUUGa--CUACUa--------CGGGUUGaGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 16943 0.67 0.9559
Target:  5'- uCCAcCUccGAUGA-GCCCGAggCGAGCg -3'
miRNA:   3'- cGGUuGA--CUACUaCGGGUUgaGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 23592 0.67 0.9559
Target:  5'- aCCAcuuggcGCUGAUGAUcaUCAGCgUCGAGCu -3'
miRNA:   3'- cGGU------UGACUACUAcgGGUUG-AGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 58909 0.67 0.959833
Target:  5'- gGUCAACgugGAUGAaaUGCCaCAACguUCGcGCa -3'
miRNA:   3'- -CGGUUGa--CUACU--ACGG-GUUG--AGCuCG- -5'
11314 5' -50.9 NC_003084.1 + 49371 0.67 0.963517
Target:  5'- gGCCGuagUUGGUGGUGCUagCAuuuaaggccACUUGAGCg -3'
miRNA:   3'- -CGGUu--GACUACUACGG--GU---------UGAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 81309 0.67 0.963517
Target:  5'- cCCGGCggaGAUGAUugcgaagauaGCCuCAGCcCGAGCg -3'
miRNA:   3'- cGGUUGa--CUACUA----------CGG-GUUGaGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 13411 0.66 0.975631
Target:  5'- aCCAACagugaccUGGUGGUGCUCAaaaccccgGCUCGAa- -3'
miRNA:   3'- cGGUUG-------ACUACUACGGGU--------UGAGCUcg -5'
11314 5' -50.9 NC_003084.1 + 31820 0.66 0.975897
Target:  5'- aGCCcGC-GGUGGUG-CCAAC-CGAGUc -3'
miRNA:   3'- -CGGuUGaCUACUACgGGUUGaGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 58716 0.66 0.97844
Target:  5'- gGUCAACgGAaGGUGCCCAAgUUuaaGGGUa -3'
miRNA:   3'- -CGGUUGaCUaCUACGGGUUgAG---CUCG- -5'
11314 5' -50.9 NC_003084.1 + 91102 0.68 0.951713
Target:  5'- gGCCAcACgu-UGGUGUCCGuGCUUGGGCc -3'
miRNA:   3'- -CGGU-UGacuACUACGGGU-UGAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 99940 0.68 0.947268
Target:  5'- -aCGACUGGUG--GCCgAcCUCGGGCu -3'
miRNA:   3'- cgGUUGACUACuaCGGgUuGAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 25327 0.68 0.932349
Target:  5'- gGCCcuACcGAcGAUGCCCGACacgguggCGGGCc -3'
miRNA:   3'- -CGGu-UGaCUaCUACGGGUUGa------GCUCG- -5'
11314 5' -50.9 NC_003084.1 + 47566 0.74 0.681851
Target:  5'- aGCCAACUGcaauAUGGUGCUCAcgaaggaggaGCUgaaCGAGCu -3'
miRNA:   3'- -CGGUUGAC----UACUACGGGU----------UGA---GCUCG- -5'
11314 5' -50.9 NC_003084.1 + 19223 0.72 0.775378
Target:  5'- aGCCAAC-GGUuucGGUGUCCAAUaCGGGCa -3'
miRNA:   3'- -CGGUUGaCUA---CUACGGGUUGaGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 65015 0.71 0.82282
Target:  5'- cGCCGACaGAaaguUGAgcgucaaaucGCCCAgaaACUCGGGCg -3'
miRNA:   3'- -CGGUUGaCU----ACUa---------CGGGU---UGAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 9320 0.71 0.854866
Target:  5'- cGCCAcuacaaccaucaaaGCUGGUagaccGGUgcGCCCAGCUCG-GCa -3'
miRNA:   3'- -CGGU--------------UGACUA-----CUA--CGGGUUGAGCuCG- -5'
11314 5' -50.9 NC_003084.1 + 97369 0.7 0.865411
Target:  5'- aCCAACUGGUGAaacuguugaGCCCGGCcugcaCGAGUu -3'
miRNA:   3'- cGGUUGACUACUa--------CGGGUUGa----GCUCG- -5'
11314 5' -50.9 NC_003084.1 + 105651 0.7 0.888199
Target:  5'- aGUCGGCcGA-GGUGUCCAgguaGCUUGGGCa -3'
miRNA:   3'- -CGGUUGaCUaCUACGGGU----UGAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 95434 0.7 0.895295
Target:  5'- uUCAACg---GA-GCCCAACUCGAGg -3'
miRNA:   3'- cGGUUGacuaCUaCGGGUUGAGCUCg -5'
11314 5' -50.9 NC_003084.1 + 14654 0.69 0.926841
Target:  5'- gGCCGcGCUGA-GAUGUUCAGCuucauagucgUCGGGCc -3'
miRNA:   3'- -CGGU-UGACUaCUACGGGUUG----------AGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.