Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11314 | 5' | -50.9 | NC_003084.1 | + | 7608 | 1.15 | 0.002338 |
Target: 5'- uGCCAACUGAUGAUGCCCAACUCGAGCa -3' miRNA: 3'- -CGGUUGACUACUACGGGUUGAGCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 78206 | 0.67 | 0.959833 |
Target: 5'- aCCGAUg---GAUGaCCGACUUGGGCa -3' miRNA: 3'- cGGUUGacuaCUACgGGUUGAGCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 55485 | 0.67 | 0.963517 |
Target: 5'- uCCAACUGgcGGUGCaaauuuugCAGCUcCGAGUc -3' miRNA: 3'- cGGUUGACuaCUACGg-------GUUGA-GCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 49916 | 0.66 | 0.984882 |
Target: 5'- aCCAccACUGGUGua--CCAACUUGGGUu -3' miRNA: 3'- cGGU--UGACUACuacgGGUUGAGCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 74195 | 0.74 | 0.703234 |
Target: 5'- uGUCGguuucACUGGUGAccaagcGCgCCAACUCGGGCg -3' miRNA: 3'- -CGGU-----UGACUACUa-----CG-GGUUGAGCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 45920 | 0.73 | 0.745104 |
Target: 5'- cGCCGACgagGAUGAUGUCgAuggUGAGCa -3' miRNA: 3'- -CGGUUGa--CUACUACGGgUugaGCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 59194 | 0.71 | 0.857334 |
Target: 5'- gGCCAcaGCUGGg---GCCCGGgUUGGGCu -3' miRNA: 3'- -CGGU--UGACUacuaCGGGUUgAGCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 64525 | 0.7 | 0.865411 |
Target: 5'- cCUAAC-GGUGGaccUGCCCAGCUCGAu- -3' miRNA: 3'- cGGUUGaCUACU---ACGGGUUGAGCUcg -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 97545 | 0.7 | 0.893193 |
Target: 5'- aCCAcCUGgcGGUGCCCcucaaagucagccaAACUCGuGCa -3' miRNA: 3'- cGGUuGACuaCUACGGG--------------UUGAGCuCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 66660 | 0.67 | 0.959833 |
Target: 5'- cGCuCGGCUGGgcuUGAUuCCUgguAGCUCGAGUg -3' miRNA: 3'- -CG-GUUGACU---ACUAcGGG---UUGAGCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 30405 | 0.69 | 0.915021 |
Target: 5'- gGCCGGaUGc-GGUGCaccuCCAACUCGGGCa -3' miRNA: 3'- -CGGUUgACuaCUACG----GGUUGAGCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 21288 | 0.7 | 0.880849 |
Target: 5'- cGCuCGACUcg-GA-GCCCGACUgGGGCa -3' miRNA: 3'- -CG-GUUGAcuaCUaCGGGUUGAgCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 2198 | 0.77 | 0.520902 |
Target: 5'- gGCCAACUGGUGAUaCUCAACUaGGGUu -3' miRNA: 3'- -CGGUUGACUACUAcGGGUUGAgCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 50585 | 0.69 | 0.91928 |
Target: 5'- uGUCAACUc-UGAUaugccgcuaccccaGCCCaAACUCGAGCu -3' miRNA: 3'- -CGGUUGAcuACUA--------------CGGG-UUGAGCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 105765 | 0.75 | 0.616922 |
Target: 5'- gGCCGACUGGUGAUGCUaaaugaGGgUgGAGUg -3' miRNA: 3'- -CGGUUGACUACUACGGg-----UUgAgCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 102409 | 0.7 | 0.873251 |
Target: 5'- uGCCuguuuGCaGGUGGgcuuguUGCCCGACUCcAGCa -3' miRNA: 3'- -CGGu----UGaCUACU------ACGGGUUGAGcUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 9791 | 0.67 | 0.9559 |
Target: 5'- cGCCAACcGAguccgGUCCGucuucCUCGAGCu -3' miRNA: 3'- -CGGUUGaCUacua-CGGGUu----GAGCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 70426 | 0.67 | 0.963517 |
Target: 5'- gGCUgAACUGGUGcgaGUCCcgUUCGAGCu -3' miRNA: 3'- -CGG-UUGACUACua-CGGGuuGAGCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 1236 | 0.74 | 0.681851 |
Target: 5'- gGCCGACUGGUGAUGCUaaaugaGGgUgGAGUu -3' miRNA: 3'- -CGGUUGACUACUACGGg-----UUgAgCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 75300 | 0.71 | 0.840502 |
Target: 5'- gGCCAAC--GUGG-GCuUCAGCUCGAGCc -3' miRNA: 3'- -CGGUUGacUACUaCG-GGUUGAGCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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