miRNA display CGI


Results 1 - 20 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11314 5' -50.9 NC_003084.1 + 105765 0.75 0.616922
Target:  5'- gGCCGACUGGUGAUGCUaaaugaGGgUgGAGUg -3'
miRNA:   3'- -CGGUUGACUACUACGGg-----UUgAgCUCG- -5'
11314 5' -50.9 NC_003084.1 + 105651 0.7 0.888199
Target:  5'- aGUCGGCcGA-GGUGUCCAgguaGCUUGGGCa -3'
miRNA:   3'- -CGGUUGaCUaCUACGGGU----UGAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 102409 0.7 0.873251
Target:  5'- uGCCuguuuGCaGGUGGgcuuguUGCCCGACUCcAGCa -3'
miRNA:   3'- -CGGu----UGaCUACU------ACGGGUUGAGcUCG- -5'
11314 5' -50.9 NC_003084.1 + 99940 0.68 0.947268
Target:  5'- -aCGACUGGUG--GCCgAcCUCGGGCu -3'
miRNA:   3'- cgGUUGACUACuaCGGgUuGAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 97545 0.7 0.893193
Target:  5'- aCCAcCUGgcGGUGCCCcucaaagucagccaAACUCGuGCa -3'
miRNA:   3'- cGGUuGACuaCUACGGG--------------UUGAGCuCG- -5'
11314 5' -50.9 NC_003084.1 + 97369 0.7 0.865411
Target:  5'- aCCAACUGGUGAaacuguugaGCCCGGCcugcaCGAGUu -3'
miRNA:   3'- cGGUUGACUACUa--------CGGGUUGa----GCUCG- -5'
11314 5' -50.9 NC_003084.1 + 95434 0.7 0.895295
Target:  5'- uUCAACg---GA-GCCCAACUCGAGg -3'
miRNA:   3'- cGGUUGacuaCUaCGGGUUGAGCUCg -5'
11314 5' -50.9 NC_003084.1 + 91102 0.68 0.951713
Target:  5'- gGCCAcACgu-UGGUGUCCGuGCUUGGGCc -3'
miRNA:   3'- -CGGU-UGacuACUACGGGU-UGAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 89312 0.66 0.984694
Target:  5'- aCgAGCUGGUGAUGCgguucacUCAACguaCGAGUc -3'
miRNA:   3'- cGgUUGACUACUACG-------GGUUGa--GCUCG- -5'
11314 5' -50.9 NC_003084.1 + 87101 0.67 0.970165
Target:  5'- cCCAACcGAUGGUGCUCGAUgaacagUUGcAGCu -3'
miRNA:   3'- cGGUUGaCUACUACGGGUUG------AGC-UCG- -5'
11314 5' -50.9 NC_003084.1 + 81309 0.67 0.963517
Target:  5'- cCCGGCggaGAUGAUugcgaagauaGCCuCAGCcCGAGCg -3'
miRNA:   3'- cGGUUGa--CUACUA----------CGG-GUUGaGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 78206 0.67 0.959833
Target:  5'- aCCGAUg---GAUGaCCGACUUGGGCa -3'
miRNA:   3'- cGGUUGacuaCUACgGGUUGAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 75300 0.71 0.840502
Target:  5'- gGCCAAC--GUGG-GCuUCAGCUCGAGCc -3'
miRNA:   3'- -CGGUUGacUACUaCG-GGUUGAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 74447 0.66 0.973141
Target:  5'- cGCCAgcgcuacagugaACUGGUGAUGCCgcugggaAACaUUGAGg -3'
miRNA:   3'- -CGGU------------UGACUACUACGGg------UUG-AGCUCg -5'
11314 5' -50.9 NC_003084.1 + 74195 0.74 0.703234
Target:  5'- uGUCGguuucACUGGUGAccaagcGCgCCAACUCGGGCg -3'
miRNA:   3'- -CGGU-----UGACUACUa-----CG-GGUUGAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 73788 0.66 0.982923
Target:  5'- cGCgAGCUGGUGGa--CCAG-UCGGGCg -3'
miRNA:   3'- -CGgUUGACUACUacgGGUUgAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 71832 0.66 0.97844
Target:  5'- cGCCcgaauucaAugUGAUGAaGCCCGAC-CGAuGUc -3'
miRNA:   3'- -CGG--------UugACUACUaCGGGUUGaGCU-CG- -5'
11314 5' -50.9 NC_003084.1 + 70426 0.67 0.963517
Target:  5'- gGCUgAACUGGUGcgaGUCCcgUUCGAGCu -3'
miRNA:   3'- -CGG-UUGACUACua-CGGGuuGAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 68773 0.69 0.908709
Target:  5'- gGCUAGa-GGUGGUaugcGCCCGACUUGGGUu -3'
miRNA:   3'- -CGGUUgaCUACUA----CGGGUUGAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 66660 0.67 0.959833
Target:  5'- cGCuCGGCUGGgcuUGAUuCCUgguAGCUCGAGUg -3'
miRNA:   3'- -CG-GUUGACU---ACUAcGGG---UUGAGCUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.