Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11315 | 5' | -55.9 | NC_003084.1 | + | 7966 | 1.08 | 0.002342 |
Target: 5'- gAGGACCACCCGCACGACAUCAAGCUGc -3' miRNA: 3'- -UCCUGGUGGGCGUGCUGUAGUUCGAC- -5' |
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11315 | 5' | -55.9 | NC_003084.1 | + | 65847 | 0.78 | 0.243084 |
Target: 5'- aAGGugCACCCGCcCGACGgguuAGCUGg -3' miRNA: 3'- -UCCugGUGGGCGuGCUGUagu-UCGAC- -5' |
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11315 | 5' | -55.9 | NC_003084.1 | + | 22220 | 0.73 | 0.434138 |
Target: 5'- uGGugCGCCUGCugGACucgguuAUCGAGCg- -3' miRNA: 3'- uCCugGUGGGCGugCUG------UAGUUCGac -5' |
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11315 | 5' | -55.9 | NC_003084.1 | + | 44439 | 0.72 | 0.481575 |
Target: 5'- gAGGACCACCacaGCAUGAUA--GAGUUGu -3' miRNA: 3'- -UCCUGGUGGg--CGUGCUGUagUUCGAC- -5' |
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11315 | 5' | -55.9 | NC_003084.1 | + | 42690 | 0.72 | 0.491365 |
Target: 5'- gGGGugCGCCUG-ACgGACAUCGAGCg- -3' miRNA: 3'- -UCCugGUGGGCgUG-CUGUAGUUCGac -5' |
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11315 | 5' | -55.9 | NC_003084.1 | + | 105266 | 0.72 | 0.521263 |
Target: 5'- cGGugUACgCCGCACGAC--CGAGUUGg -3' miRNA: 3'- uCCugGUG-GGCGUGCUGuaGUUCGAC- -5' |
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11315 | 5' | -55.9 | NC_003084.1 | + | 10002 | 0.7 | 0.614378 |
Target: 5'- cGGACCAgUUGCGCGAUuUCAuggcacaggAGCUGa -3' miRNA: 3'- uCCUGGUgGGCGUGCUGuAGU---------UCGAC- -5' |
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11315 | 5' | -55.9 | NC_003084.1 | + | 74786 | 0.7 | 0.614378 |
Target: 5'- cGGGCCGCCCGCACcuuccGCugguUCAGGUc- -3' miRNA: 3'- uCCUGGUGGGCGUGc----UGu---AGUUCGac -5' |
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11315 | 5' | -55.9 | NC_003084.1 | + | 53228 | 0.7 | 0.624896 |
Target: 5'- uGGACCuuuucaCCGCACGACcgugaCGAGUUGg -3' miRNA: 3'- uCCUGGug----GGCGUGCUGua---GUUCGAC- -5' |
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11315 | 5' | -55.9 | NC_003084.1 | + | 76692 | 0.7 | 0.635419 |
Target: 5'- gAGGACgACCCGgGCGACG---AGUUGu -3' miRNA: 3'- -UCCUGgUGGGCgUGCUGUaguUCGAC- -5' |
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11315 | 5' | -55.9 | NC_003084.1 | + | 1666 | 0.69 | 0.64594 |
Target: 5'- uGGGACCgaagcACCCGCACcuggccucCAUgGAGCUGc -3' miRNA: 3'- -UCCUGG-----UGGGCGUGcu------GUAgUUCGAC- -5' |
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11315 | 5' | -55.9 | NC_003084.1 | + | 9349 | 0.69 | 0.666937 |
Target: 5'- cGGugCGCCCaGCuCGGCAgcgaCAAGUUGa -3' miRNA: 3'- uCCugGUGGG-CGuGCUGUa---GUUCGAC- -5' |
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11315 | 5' | -55.9 | NC_003084.1 | + | 107568 | 0.69 | 0.677395 |
Target: 5'- aAGGACCACCCgaagguucgcucGCACGAgggaCGUCuaguGCUa -3' miRNA: 3'- -UCCUGGUGGG------------CGUGCU----GUAGuu--CGAc -5' |
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11315 | 5' | -55.9 | NC_003084.1 | + | 47783 | 0.68 | 0.708497 |
Target: 5'- cAGGugUACUCuuucaGCACGGCGUUggGCa- -3' miRNA: 3'- -UCCugGUGGG-----CGUGCUGUAGuuCGac -5' |
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11315 | 5' | -55.9 | NC_003084.1 | + | 10795 | 0.68 | 0.708497 |
Target: 5'- cGGGaACCACCUcgagcaGCGCaACcgCGAGCUGa -3' miRNA: 3'- -UCC-UGGUGGG------CGUGcUGuaGUUCGAC- -5' |
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11315 | 5' | -55.9 | NC_003084.1 | + | 50929 | 0.68 | 0.708497 |
Target: 5'- gAGGACUgcauacauuCCCGCuACcACAUCGAGUUGg -3' miRNA: 3'- -UCCUGGu--------GGGCG-UGcUGUAGUUCGAC- -5' |
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11315 | 5' | -55.9 | NC_003084.1 | + | 101530 | 0.68 | 0.718741 |
Target: 5'- aGGGACCGgUCGaACcGCAUCAAGCUc -3' miRNA: 3'- -UCCUGGUgGGCgUGcUGUAGUUCGAc -5' |
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11315 | 5' | -55.9 | NC_003084.1 | + | 94939 | 0.68 | 0.732948 |
Target: 5'- gAGGGCCACCaccggauccaccuugCGCugGACGauGAGCg- -3' miRNA: 3'- -UCCUGGUGG---------------GCGugCUGUagUUCGac -5' |
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11315 | 5' | -55.9 | NC_003084.1 | + | 52874 | 0.68 | 0.748961 |
Target: 5'- aGGGACCACUCGUGCaccgaauuCAUCGGGUa- -3' miRNA: 3'- -UCCUGGUGGGCGUGcu------GUAGUUCGac -5' |
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11315 | 5' | -55.9 | NC_003084.1 | + | 19912 | 0.68 | 0.748961 |
Target: 5'- cGGGACCAUCguUGCAcCGAUuUCAaaGGCUGa -3' miRNA: 3'- -UCCUGGUGG--GCGU-GCUGuAGU--UCGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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