Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11315 | 5' | -55.9 | NC_003084.1 | + | 49591 | 0.67 | 0.75883 |
Target: 5'- cGGcACCACCCGCuCGugGUacgauuuguaCAAGCa- -3' miRNA: 3'- uCC-UGGUGGGCGuGCugUA----------GUUCGac -5' |
|||||||
11315 | 5' | -55.9 | NC_003084.1 | + | 2108 | 0.67 | 0.75883 |
Target: 5'- cAGccCCGCCCGCACaACAUUGgAGCUGu -3' miRNA: 3'- -UCcuGGUGGGCGUGcUGUAGU-UCGAC- -5' |
|||||||
11315 | 5' | -55.9 | NC_003084.1 | + | 64794 | 0.67 | 0.767612 |
Target: 5'- gAGGGCCACCgugagguUGUGCGGC-UCAAGUUc -3' miRNA: 3'- -UCCUGGUGG-------GCGUGCUGuAGUUCGAc -5' |
|||||||
11315 | 5' | -55.9 | NC_003084.1 | + | 61004 | 0.67 | 0.787689 |
Target: 5'- -cGACCGCUuuuacaCGCACGACAaguuUCAacuucGGCUGg -3' miRNA: 3'- ucCUGGUGG------GCGUGCUGU----AGU-----UCGAC- -5' |
|||||||
11315 | 5' | -55.9 | NC_003084.1 | + | 25861 | 0.67 | 0.797025 |
Target: 5'- cGGGCCGCUgGUGCugcauACAUCGAGgCUGg -3' miRNA: 3'- uCCUGGUGGgCGUGc----UGUAGUUC-GAC- -5' |
|||||||
11315 | 5' | -55.9 | NC_003084.1 | + | 26494 | 0.67 | 0.805294 |
Target: 5'- cGGAugcagccuuuuCCACCCGUauaaacACGGCcgaggugagcgaaAUCGAGCUGg -3' miRNA: 3'- uCCU-----------GGUGGGCG------UGCUG-------------UAGUUCGAC- -5' |
|||||||
11315 | 5' | -55.9 | NC_003084.1 | + | 27419 | 0.67 | 0.806204 |
Target: 5'- --aGCCACCCGUugGAauCGUUggGCg- -3' miRNA: 3'- uccUGGUGGGCGugCU--GUAGuuCGac -5' |
|||||||
11315 | 5' | -55.9 | NC_003084.1 | + | 102200 | 0.66 | 0.844492 |
Target: 5'- gGGGGCCACCCGguaCAgGugGUCGuacgugcccgccauuAGCa- -3' miRNA: 3'- -UCCUGGUGGGC---GUgCugUAGU---------------UCGac -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home