Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11319 | 5' | -49.9 | NC_003084.1 | + | 24482 | 1.12 | 0.006672 |
Target: 5'- cCCCACCACCGUUUAACCCGAUUUCCGu -3' miRNA: 3'- -GGGUGGUGGCAAAUUGGGCUAAAGGC- -5' |
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11319 | 5' | -49.9 | NC_003084.1 | + | 16235 | 0.74 | 0.809658 |
Target: 5'- gCCCuCCACCGUUguaucACCCGG--UCCa -3' miRNA: 3'- -GGGuGGUGGCAAau---UGGGCUaaAGGc -5' |
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11319 | 5' | -49.9 | NC_003084.1 | + | 90262 | 0.71 | 0.915131 |
Target: 5'- gCCCACCAgCGguguaacggugGACCCGAaugcgUUUCCc -3' miRNA: 3'- -GGGUGGUgGCaaa--------UUGGGCU-----AAAGGc -5' |
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11319 | 5' | -49.9 | NC_003084.1 | + | 62058 | 0.7 | 0.927375 |
Target: 5'- aCCACCACCGUUgcuaccacuacauguGCCCaGUUUCa- -3' miRNA: 3'- gGGUGGUGGCAAau-------------UGGGcUAAAGgc -5' |
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11319 | 5' | -49.9 | NC_003084.1 | + | 25467 | 0.7 | 0.939458 |
Target: 5'- gCCCGCCACCGUgucgGGCaucguCGGUagggCCGa -3' miRNA: 3'- -GGGUGGUGGCAaa--UUGg----GCUAaa--GGC- -5' |
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11319 | 5' | -49.9 | NC_003084.1 | + | 48862 | 0.7 | 0.94428 |
Target: 5'- gCCACCACCGgUUUAACgCG-UUUCg- -3' miRNA: 3'- gGGUGGUGGC-AAAUUGgGCuAAAGgc -5' |
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11319 | 5' | -49.9 | NC_003084.1 | + | 85185 | 0.69 | 0.961021 |
Target: 5'- cCCCaACCGCgGU--GGuuCGAUUUCCGa -3' miRNA: 3'- -GGG-UGGUGgCAaaUUggGCUAAAGGC- -5' |
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11319 | 5' | -49.9 | NC_003084.1 | + | 65835 | 0.69 | 0.96459 |
Target: 5'- uCCCACCACUGgaaggUgcACCCGc---CCGa -3' miRNA: 3'- -GGGUGGUGGCa----AauUGGGCuaaaGGC- -5' |
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11319 | 5' | -49.9 | NC_003084.1 | + | 68225 | 0.69 | 0.96459 |
Target: 5'- gUCCACCAgCGUauccaagcugUAGCCCGGUggaaccaacguUUCCa -3' miRNA: 3'- -GGGUGGUgGCAa---------AUUGGGCUA-----------AAGGc -5' |
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11319 | 5' | -49.9 | NC_003084.1 | + | 53137 | 0.69 | 0.96459 |
Target: 5'- gCCCugCACCuucUUUGGCCCGGgcgaCUGg -3' miRNA: 3'- -GGGugGUGGc--AAAUUGGGCUaaa-GGC- -5' |
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11319 | 5' | -49.9 | NC_003084.1 | + | 21558 | 0.69 | 0.967924 |
Target: 5'- aCCACCACCGcgua--CCGG--UCCGg -3' miRNA: 3'- gGGUGGUGGCaaauugGGCUaaAGGC- -5' |
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11319 | 5' | -49.9 | NC_003084.1 | + | 21839 | 0.68 | 0.973912 |
Target: 5'- uUCCAUCGCCGUgu-ACUCGAUaucacCCGu -3' miRNA: 3'- -GGGUGGUGGCAaauUGGGCUAaa---GGC- -5' |
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11319 | 5' | -49.9 | NC_003084.1 | + | 41565 | 0.68 | 0.981309 |
Target: 5'- aCCAUCugCGcUUUGGCCCGucg-CCu -3' miRNA: 3'- gGGUGGugGC-AAAUUGGGCuaaaGGc -5' |
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11319 | 5' | -49.9 | NC_003084.1 | + | 52720 | 0.67 | 0.983386 |
Target: 5'- aCCCaaauuGCCGCUGU---ACCCGAUgaaUUCGg -3' miRNA: 3'- -GGG-----UGGUGGCAaauUGGGCUAa--AGGC- -5' |
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11319 | 5' | -49.9 | NC_003084.1 | + | 59988 | 0.67 | 0.983386 |
Target: 5'- aCCACCGCCGgaUAcuGCCCcaagauguacAUUUCCu -3' miRNA: 3'- gGGUGGUGGCaaAU--UGGGc---------UAAAGGc -5' |
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11319 | 5' | -49.9 | NC_003084.1 | + | 69078 | 0.67 | 0.985994 |
Target: 5'- uUCCACCACaCauuuugcgcuacaagGUgUGACCCGGggUCCa -3' miRNA: 3'- -GGGUGGUG-G---------------CAaAUUGGGCUaaAGGc -5' |
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11319 | 5' | -49.9 | NC_003084.1 | + | 18584 | 0.67 | 0.987011 |
Target: 5'- aCCACCACCGUgcgGGCCauc--UCUGc -3' miRNA: 3'- gGGUGGUGGCAaa-UUGGgcuaaAGGC- -5' |
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11319 | 5' | -49.9 | NC_003084.1 | + | 30921 | 0.67 | 0.988578 |
Target: 5'- aCCCG-CGCCGUUgaucUGGCaCgGAUUUCCc -3' miRNA: 3'- -GGGUgGUGGCAA----AUUG-GgCUAAAGGc -5' |
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11319 | 5' | -49.9 | NC_003084.1 | + | 19708 | 0.67 | 0.988578 |
Target: 5'- aCC-UCGCCGggugcUAGCCCGuUUUCCa -3' miRNA: 3'- gGGuGGUGGCaa---AUUGGGCuAAAGGc -5' |
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11319 | 5' | -49.9 | NC_003084.1 | + | 52547 | 0.67 | 0.989994 |
Target: 5'- aCCCuCCAUUGUaUAGCUCGggUUCgCGa -3' miRNA: 3'- -GGGuGGUGGCAaAUUGGGCuaAAG-GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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