Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11319 | 5' | -49.9 | NC_003084.1 | + | 66136 | 0.66 | 0.993433 |
Target: 5'- aCCguaGCaCGCCGggUGGCCCGAccccaCCGg -3' miRNA: 3'- -GGg--UG-GUGGCaaAUUGGGCUaaa--GGC- -5' |
|||||||
11319 | 5' | -49.9 | NC_003084.1 | + | 29270 | 0.66 | 0.993433 |
Target: 5'- -gCACCGCCGUaaucgGAUCUGAaaggcguguuUUUCCGu -3' miRNA: 3'- ggGUGGUGGCAaa---UUGGGCU----------AAAGGC- -5' |
|||||||
11319 | 5' | -49.9 | NC_003084.1 | + | 18217 | 0.66 | 0.993433 |
Target: 5'- aCCCaacGCCACCGgcu-GCaCCGAauugUCCa -3' miRNA: 3'- -GGG---UGGUGGCaaauUG-GGCUaa--AGGc -5' |
|||||||
11319 | 5' | -49.9 | NC_003084.1 | + | 53870 | 0.66 | 0.993433 |
Target: 5'- gCCACCgGCCGguugUUGGgUCGGUUUUCa -3' miRNA: 3'- gGGUGG-UGGCa---AAUUgGGCUAAAGGc -5' |
|||||||
11319 | 5' | -49.9 | NC_003084.1 | + | 82501 | 0.66 | 0.995068 |
Target: 5'- uUCCACCucuGCCGUguucacgUUAcuACCCGGcgUCCu -3' miRNA: 3'- -GGGUGG---UGGCA-------AAU--UGGGCUaaAGGc -5' |
|||||||
11319 | 5' | -49.9 | NC_003084.1 | + | 67205 | 0.66 | 0.995144 |
Target: 5'- gUCCACCACCGU--GAUCUGcgcgUCGg -3' miRNA: 3'- -GGGUGGUGGCAaaUUGGGCuaaaGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home