miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11322 3' -55.3 NC_003084.1 + 59527 0.67 0.811928
Target:  5'- -uGCACC-C-ACCACC-CCaGAUCACc -3'
miRNA:   3'- guCGUGGuGuUGGUGGuGGcCUAGUG- -5'
11322 3' -55.3 NC_003084.1 + 59232 0.67 0.811928
Target:  5'- aGGaacaACCGCAACCACCACC---UCAg -3'
miRNA:   3'- gUCg---UGGUGUUGGUGGUGGccuAGUg -5'
11322 3' -55.3 NC_003084.1 + 53016 0.67 0.811928
Target:  5'- gCAGCACCACcugGGCuCGCgGUCGuGGUCACg -3'
miRNA:   3'- -GUCGUGGUG---UUG-GUGgUGGC-CUAGUG- -5'
11322 3' -55.3 NC_003084.1 + 96502 0.67 0.802801
Target:  5'- cUAGCGCCACGaacgcucgcccaACCACCACC---UCAg -3'
miRNA:   3'- -GUCGUGGUGU------------UGGUGGUGGccuAGUg -5'
11322 3' -55.3 NC_003084.1 + 91683 0.67 0.793508
Target:  5'- cCAaCACCACAACUgcgagGCCAacuCCGGcUCACa -3'
miRNA:   3'- -GUcGUGGUGUUGG-----UGGU---GGCCuAGUG- -5'
11322 3' -55.3 NC_003084.1 + 59902 0.67 0.78406
Target:  5'- uCGGauuuGCCAUAcucACCACCACCGGugaGCu -3'
miRNA:   3'- -GUCg---UGGUGU---UGGUGGUGGCCuagUG- -5'
11322 3' -55.3 NC_003084.1 + 107387 0.67 0.78406
Target:  5'- uGGCACUGCAgcgaGCUACCACCGaGAa--- -3'
miRNA:   3'- gUCGUGGUGU----UGGUGGUGGC-CUagug -5'
11322 3' -55.3 NC_003084.1 + 71866 0.67 0.78406
Target:  5'- -cGCACCACugguACCACCuggaGGAUCu- -3'
miRNA:   3'- guCGUGGUGu---UGGUGGugg-CCUAGug -5'
11322 3' -55.3 NC_003084.1 + 81444 0.68 0.774466
Target:  5'- aGGCuaucuUCGCAAUCAucuCCGCCGGGUUAUg -3'
miRNA:   3'- gUCGu----GGUGUUGGU---GGUGGCCUAGUG- -5'
11322 3' -55.3 NC_003084.1 + 61333 0.68 0.764737
Target:  5'- uGGUgaGCCACGgguugGCCgcACCGCCGGG-CACa -3'
miRNA:   3'- gUCG--UGGUGU-----UGG--UGGUGGCCUaGUG- -5'
11322 3' -55.3 NC_003084.1 + 43465 0.68 0.764737
Target:  5'- -uGUGCCGCAuugGCCACCGCCGc--CACc -3'
miRNA:   3'- guCGUGGUGU---UGGUGGUGGCcuaGUG- -5'
11322 3' -55.3 NC_003084.1 + 79962 0.68 0.764737
Target:  5'- gGGCACCgguggACAACCugGCCgACCGGuUCAa -3'
miRNA:   3'- gUCGUGG-----UGUUGG--UGG-UGGCCuAGUg -5'
11322 3' -55.3 NC_003084.1 + 70149 0.68 0.754881
Target:  5'- -cGCACCAUggUCACCAugUCGGGgccCACc -3'
miRNA:   3'- guCGUGGUGuuGGUGGU--GGCCUa--GUG- -5'
11322 3' -55.3 NC_003084.1 + 100973 0.68 0.744909
Target:  5'- gCAGuCACCACcACCGCCGCCaccacCACa -3'
miRNA:   3'- -GUC-GUGGUGuUGGUGGUGGccua-GUG- -5'
11322 3' -55.3 NC_003084.1 + 93983 0.68 0.734832
Target:  5'- uGGCACCAUcuuguGCCGCaguCCGGcgGUCGCu -3'
miRNA:   3'- gUCGUGGUGu----UGGUGgu-GGCC--UAGUG- -5'
11322 3' -55.3 NC_003084.1 + 98235 0.69 0.714401
Target:  5'- ---gGCCAC-ACCACCGcCCGGuGUCACc -3'
miRNA:   3'- gucgUGGUGuUGGUGGU-GGCC-UAGUG- -5'
11322 3' -55.3 NC_003084.1 + 53517 0.69 0.69367
Target:  5'- gCAGCGCgGCuuccaaaccuCCACCAUCGcGUCACg -3'
miRNA:   3'- -GUCGUGgUGuu--------GGUGGUGGCcUAGUG- -5'
11322 3' -55.3 NC_003084.1 + 38655 0.69 0.683218
Target:  5'- gCAGC-CCACAaauGCCAUagcucgACCGGAUCGg -3'
miRNA:   3'- -GUCGuGGUGU---UGGUGg-----UGGCCUAGUg -5'
11322 3' -55.3 NC_003084.1 + 54788 0.69 0.67272
Target:  5'- cCGGCugCACAcCuCACCGuCCGGG-CGCa -3'
miRNA:   3'- -GUCGugGUGUuG-GUGGU-GGCCUaGUG- -5'
11322 3' -55.3 NC_003084.1 + 2098 0.7 0.641052
Target:  5'- cCAGCACCaACAGCC-CCGCCcg--CACa -3'
miRNA:   3'- -GUCGUGG-UGUUGGuGGUGGccuaGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.