miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11322 3' -55.3 NC_003084.1 + 53016 0.67 0.811928
Target:  5'- gCAGCACCACcugGGCuCGCgGUCGuGGUCACg -3'
miRNA:   3'- -GUCGUGGUG---UUG-GUGgUGGC-CUAGUG- -5'
11322 3' -55.3 NC_003084.1 + 53517 0.69 0.69367
Target:  5'- gCAGCGCgGCuuccaaaccuCCACCAUCGcGUCACg -3'
miRNA:   3'- -GUCGUGgUGuu--------GGUGGUGGCcUAGUG- -5'
11322 3' -55.3 NC_003084.1 + 54487 0.77 0.290611
Target:  5'- -cGCACCACu-CCACCuCCGGGUCGa -3'
miRNA:   3'- guCGUGGUGuuGGUGGuGGCCUAGUg -5'
11322 3' -55.3 NC_003084.1 + 54788 0.69 0.67272
Target:  5'- cCGGCugCACAcCuCACCGuCCGGG-CGCa -3'
miRNA:   3'- -GUCGugGUGUuG-GUGGU-GGCCUaGUG- -5'
11322 3' -55.3 NC_003084.1 + 55406 0.66 0.870455
Target:  5'- uCGGCAgCAgCAGCaGCaGCCGGAUCAa -3'
miRNA:   3'- -GUCGUgGU-GUUGgUGgUGGCCUAGUg -5'
11322 3' -55.3 NC_003084.1 + 56979 0.66 0.854771
Target:  5'- -uGCACCGCuGCCGCCcaauUCGGAcaACa -3'
miRNA:   3'- guCGUGGUGuUGGUGGu---GGCCUagUG- -5'
11322 3' -55.3 NC_003084.1 + 59232 0.67 0.811928
Target:  5'- aGGaacaACCGCAACCACCACC---UCAg -3'
miRNA:   3'- gUCg---UGGUGUUGGUGGUGGccuAGUg -5'
11322 3' -55.3 NC_003084.1 + 59527 0.67 0.811928
Target:  5'- -uGCACC-C-ACCACC-CCaGAUCACc -3'
miRNA:   3'- guCGUGGuGuUGGUGGuGGcCUAGUG- -5'
11322 3' -55.3 NC_003084.1 + 59902 0.67 0.78406
Target:  5'- uCGGauuuGCCAUAcucACCACCACCGGugaGCu -3'
miRNA:   3'- -GUCg---UGGUGU---UGGUGGUGGCCuagUG- -5'
11322 3' -55.3 NC_003084.1 + 61333 0.68 0.764737
Target:  5'- uGGUgaGCCACGgguugGCCgcACCGCCGGG-CACa -3'
miRNA:   3'- gUCG--UGGUGU-----UGG--UGGUGGCCUaGUG- -5'
11322 3' -55.3 NC_003084.1 + 64165 0.7 0.630469
Target:  5'- gAGCACUugGGCUACCuguAUCGGGUaCACc -3'
miRNA:   3'- gUCGUGGugUUGGUGG---UGGCCUA-GUG- -5'
11322 3' -55.3 NC_003084.1 + 66557 0.7 0.630469
Target:  5'- aCAGCgguagACCugG-CCACCGCCGG-UCAa -3'
miRNA:   3'- -GUCG-----UGGugUuGGUGGUGGCCuAGUg -5'
11322 3' -55.3 NC_003084.1 + 67194 0.67 0.829649
Target:  5'- --uUACCGCuagaguCCACCACCGuGAUCuGCg -3'
miRNA:   3'- gucGUGGUGuu----GGUGGUGGC-CUAG-UG- -5'
11322 3' -55.3 NC_003084.1 + 70149 0.68 0.754881
Target:  5'- -cGCACCAUggUCACCAugUCGGGgccCACc -3'
miRNA:   3'- guCGUGGUGuuGGUGGU--GGCCUa--GUG- -5'
11322 3' -55.3 NC_003084.1 + 70158 0.67 0.82088
Target:  5'- aAGCACCGCcGCUACaACUGG-UUACg -3'
miRNA:   3'- gUCGUGGUGuUGGUGgUGGCCuAGUG- -5'
11322 3' -55.3 NC_003084.1 + 70234 0.71 0.556886
Target:  5'- -cGUAgCACAGCCaACCGCCGGuacUCAUg -3'
miRNA:   3'- guCGUgGUGUUGG-UGGUGGCCu--AGUG- -5'
11322 3' -55.3 NC_003084.1 + 71866 0.67 0.78406
Target:  5'- -cGCACCACugguACCACCuggaGGAUCu- -3'
miRNA:   3'- guCGUGGUGu---UGGUGGugg-CCUAGug -5'
11322 3' -55.3 NC_003084.1 + 73394 0.76 0.335051
Target:  5'- aCGGUAaCGCGgcuucACCugCGCCGGAUCACa -3'
miRNA:   3'- -GUCGUgGUGU-----UGGugGUGGCCUAGUG- -5'
11322 3' -55.3 NC_003084.1 + 75022 0.72 0.536253
Target:  5'- -cGCACCACAACacgauuggUACCAuggccCCGGGUUACg -3'
miRNA:   3'- guCGUGGUGUUG--------GUGGU-----GGCCUAGUG- -5'
11322 3' -55.3 NC_003084.1 + 79962 0.68 0.764737
Target:  5'- gGGCACCgguggACAACCugGCCgACCGGuUCAa -3'
miRNA:   3'- gUCGUGG-----UGUUGG--UGG-UGGCCuAGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.