miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11322 3' -55.3 NC_003084.1 + 2098 0.7 0.641052
Target:  5'- cCAGCACCaACAGCC-CCGCCcg--CACa -3'
miRNA:   3'- -GUCGUGG-UGUUGGuGGUGGccuaGUG- -5'
11322 3' -55.3 NC_003084.1 + 2762 0.66 0.857979
Target:  5'- cCAGCAaacCCACAacccucgguaggaagGCCACCuugaGCCGuuUCACa -3'
miRNA:   3'- -GUCGU---GGUGU---------------UGGUGG----UGGCcuAGUG- -5'
11322 3' -55.3 NC_003084.1 + 3433 0.67 0.82088
Target:  5'- gCAGCACCAgCAG-CACCAgCGGAg--- -3'
miRNA:   3'- -GUCGUGGU-GUUgGUGGUgGCCUagug -5'
11322 3' -55.3 NC_003084.1 + 4544 0.67 0.82088
Target:  5'- uCAGCugAUCGaugaAACCACCGCCaauuuGAUCACa -3'
miRNA:   3'- -GUCG--UGGUg---UUGGUGGUGGc----CUAGUG- -5'
11322 3' -55.3 NC_003084.1 + 7014 0.67 0.82088
Target:  5'- uCAGCACCACcguaucCCACCAC-GGucCACa -3'
miRNA:   3'- -GUCGUGGUGuu----GGUGGUGgCCuaGUG- -5'
11322 3' -55.3 NC_003084.1 + 13887 0.66 0.871215
Target:  5'- uCAGCACgAUGACCACgucguggucgcuuuCCGGGUCGa -3'
miRNA:   3'- -GUCGUGgUGUUGGUGgu------------GGCCUAGUg -5'
11322 3' -55.3 NC_003084.1 + 25474 0.66 0.862724
Target:  5'- -cGCACCGgc-CCGCCACCGuGUCGg -3'
miRNA:   3'- guCGUGGUguuGGUGGUGGCcUAGUg -5'
11322 3' -55.3 NC_003084.1 + 27114 0.66 0.877956
Target:  5'- -uGCACCACucuaCACaagACCGGAUCu- -3'
miRNA:   3'- guCGUGGUGuug-GUGg--UGGCCUAGug -5'
11322 3' -55.3 NC_003084.1 + 28547 1.1 0.001878
Target:  5'- uCAGCACCACAACCACCACCGGAUCACg -3'
miRNA:   3'- -GUCGUGGUGUUGGUGGUGGCCUAGUG- -5'
11322 3' -55.3 NC_003084.1 + 34152 0.73 0.476169
Target:  5'- cCAGUACCACGACCACUAaCGGGa--- -3'
miRNA:   3'- -GUCGUGGUGUUGGUGGUgGCCUagug -5'
11322 3' -55.3 NC_003084.1 + 35401 0.77 0.290611
Target:  5'- uGGCACCGCaAAUCGCCACUGGcgagCACg -3'
miRNA:   3'- gUCGUGGUG-UUGGUGGUGGCCua--GUG- -5'
11322 3' -55.3 NC_003084.1 + 38655 0.69 0.683218
Target:  5'- gCAGC-CCACAaauGCCAUagcucgACCGGAUCGg -3'
miRNA:   3'- -GUCGuGGUGU---UGGUGg-----UGGCCUAGUg -5'
11322 3' -55.3 NC_003084.1 + 41007 0.71 0.598761
Target:  5'- uGGCGCCACAA-CACCACCuauauaacgauGGAcgCGCg -3'
miRNA:   3'- gUCGUGGUGUUgGUGGUGG-----------CCUa-GUG- -5'
11322 3' -55.3 NC_003084.1 + 42596 0.67 0.829649
Target:  5'- gCAuaACCGCGAgCACCggucguGCCGGAUCu- -3'
miRNA:   3'- -GUcgUGGUGUUgGUGG------UGGCCUAGug -5'
11322 3' -55.3 NC_003084.1 + 43465 0.68 0.764737
Target:  5'- -uGUGCCGCAuugGCCACCGCCGc--CACc -3'
miRNA:   3'- guCGUGGUGU---UGGUGGUGGCcuaGUG- -5'
11322 3' -55.3 NC_003084.1 + 43518 0.7 0.641052
Target:  5'- gAGCACCugGACgGCCGCUuuGGA-UACg -3'
miRNA:   3'- gUCGUGGugUUGgUGGUGG--CCUaGUG- -5'
11322 3' -55.3 NC_003084.1 + 44990 0.7 0.641052
Target:  5'- -uGCACCGuuaugaauCCACCACCGGAggaGCg -3'
miRNA:   3'- guCGUGGUguu-----GGUGGUGGCCUag-UG- -5'
11322 3' -55.3 NC_003084.1 + 48963 0.73 0.446457
Target:  5'- ---aACCAaaaaguuCAACCACCACCGGGUgGCg -3'
miRNA:   3'- gucgUGGU-------GUUGGUGGUGGCCUAgUG- -5'
11322 3' -55.3 NC_003084.1 + 49667 0.71 0.588234
Target:  5'- uGGCACCACcACCccaGCuCACCGGuacggcUCACa -3'
miRNA:   3'- gUCGUGGUGuUGG---UG-GUGGCCu-----AGUG- -5'
11322 3' -55.3 NC_003084.1 + 51556 0.66 0.870455
Target:  5'- gCAGCACCGgu-CCACCuucaacCCGGGccCACg -3'
miRNA:   3'- -GUCGUGGUguuGGUGGu-----GGCCUa-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.