miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11322 3' -55.3 NC_003084.1 + 107387 0.67 0.78406
Target:  5'- uGGCACUGCAgcgaGCUACCACCGaGAa--- -3'
miRNA:   3'- gUCGUGGUGU----UGGUGGUGGC-CUagug -5'
11322 3' -55.3 NC_003084.1 + 106835 0.71 0.577741
Target:  5'- gCGGUugUcCAGCUugCACCGGGUcCACg -3'
miRNA:   3'- -GUCGugGuGUUGGugGUGGCCUA-GUG- -5'
11322 3' -55.3 NC_003084.1 + 105321 0.67 0.82088
Target:  5'- aAGUACUGCGACCGggugaUACCGGAgcuggCACc -3'
miRNA:   3'- gUCGUGGUGUUGGUg----GUGGCCUa----GUG- -5'
11322 3' -55.3 NC_003084.1 + 102059 0.77 0.290611
Target:  5'- gGGCACgUACGACCACCuguACCGGGUgGCc -3'
miRNA:   3'- gUCGUG-GUGUUGGUGG---UGGCCUAgUG- -5'
11322 3' -55.3 NC_003084.1 + 101941 0.66 0.838226
Target:  5'- cCAuCACCGCGGCUcgCGCCGG-UCACg -3'
miRNA:   3'- -GUcGUGGUGUUGGugGUGGCCuAGUG- -5'
11322 3' -55.3 NC_003084.1 + 101469 0.66 0.846603
Target:  5'- -cGCGCCAauauugGGCCACCACCuGGGccgucgUUACg -3'
miRNA:   3'- guCGUGGUg-----UUGGUGGUGG-CCU------AGUG- -5'
11322 3' -55.3 NC_003084.1 + 100973 0.68 0.744909
Target:  5'- gCAGuCACCACcACCGCCGCCaccacCACa -3'
miRNA:   3'- -GUC-GUGGUGuUGGUGGUGGccua-GUG- -5'
11322 3' -55.3 NC_003084.1 + 98235 0.69 0.714401
Target:  5'- ---gGCCAC-ACCACCGcCCGGuGUCACc -3'
miRNA:   3'- gucgUGGUGuUGGUGGU-GGCC-UAGUG- -5'
11322 3' -55.3 NC_003084.1 + 97922 0.66 0.877956
Target:  5'- -cGCACgGCuugGCCaACCACUGGugcgguUCACg -3'
miRNA:   3'- guCGUGgUGu--UGG-UGGUGGCCu-----AGUG- -5'
11322 3' -55.3 NC_003084.1 + 96606 0.71 0.567289
Target:  5'- gCGGCugCGCGACCGgUugggACgGGGUCGCa -3'
miRNA:   3'- -GUCGugGUGUUGGUgG----UGgCCUAGUG- -5'
11322 3' -55.3 NC_003084.1 + 96502 0.67 0.802801
Target:  5'- cUAGCGCCACGaacgcucgcccaACCACCACC---UCAg -3'
miRNA:   3'- -GUCGUGGUGU------------UGGUGGUGGccuAGUg -5'
11322 3' -55.3 NC_003084.1 + 96438 0.72 0.505829
Target:  5'- aCAGuCGCCGCcACCACCAUCGGuacCAUu -3'
miRNA:   3'- -GUC-GUGGUGuUGGUGGUGGCCua-GUG- -5'
11322 3' -55.3 NC_003084.1 + 94930 0.83 0.131279
Target:  5'- gAGCcCCACGaggGCCACCACCGGAUcCACc -3'
miRNA:   3'- gUCGuGGUGU---UGGUGGUGGCCUA-GUG- -5'
11322 3' -55.3 NC_003084.1 + 93983 0.68 0.734832
Target:  5'- uGGCACCAUcuuguGCCGCaguCCGGcgGUCGCu -3'
miRNA:   3'- gUCGUGGUGu----UGGUGgu-GGCC--UAGUG- -5'
11322 3' -55.3 NC_003084.1 + 93550 0.66 0.854771
Target:  5'- -cGCACCAuCGAgUGCCACuCGGGUacCGCa -3'
miRNA:   3'- guCGUGGU-GUUgGUGGUG-GCCUA--GUG- -5'
11322 3' -55.3 NC_003084.1 + 92899 0.66 0.870455
Target:  5'- gCAGUACCACAugucCCGgUugUGGA-CACa -3'
miRNA:   3'- -GUCGUGGUGUu---GGUgGugGCCUaGUG- -5'
11322 3' -55.3 NC_003084.1 + 91683 0.67 0.793508
Target:  5'- cCAaCACCACAACUgcgagGCCAacuCCGGcUCACa -3'
miRNA:   3'- -GUcGUGGUGUUGG-----UGGU---GGCCuAGUG- -5'
11322 3' -55.3 NC_003084.1 + 91093 0.66 0.846603
Target:  5'- gGGCGCCAgGGCCACaCGuuGGuGUC-Cg -3'
miRNA:   3'- gUCGUGGUgUUGGUG-GUggCC-UAGuG- -5'
11322 3' -55.3 NC_003084.1 + 81444 0.68 0.774466
Target:  5'- aGGCuaucuUCGCAAUCAucuCCGCCGGGUUAUg -3'
miRNA:   3'- gUCGu----GGUGUUGGU---GGUGGCCUAGUG- -5'
11322 3' -55.3 NC_003084.1 + 80064 0.72 0.505829
Target:  5'- -uGCACUACAuUUACCACCGGAUUcCg -3'
miRNA:   3'- guCGUGGUGUuGGUGGUGGCCUAGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.