miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11322 3' -55.3 NC_003084.1 + 28547 1.1 0.001878
Target:  5'- uCAGCACCACAACCACCACCGGAUCACg -3'
miRNA:   3'- -GUCGUGGUGUUGGUGGUGGCCUAGUG- -5'
11322 3' -55.3 NC_003084.1 + 94930 0.83 0.131279
Target:  5'- gAGCcCCACGaggGCCACCACCGGAUcCACc -3'
miRNA:   3'- gUCGuGGUGU---UGGUGGUGGCCUA-GUG- -5'
11322 3' -55.3 NC_003084.1 + 102059 0.77 0.290611
Target:  5'- gGGCACgUACGACCACCuguACCGGGUgGCc -3'
miRNA:   3'- gUCGUG-GUGUUGGUGG---UGGCCUAgUG- -5'
11322 3' -55.3 NC_003084.1 + 54487 0.77 0.290611
Target:  5'- -cGCACCACu-CCACCuCCGGGUCGa -3'
miRNA:   3'- guCGUGGUGuuGGUGGuGGCCUAGUg -5'
11322 3' -55.3 NC_003084.1 + 35401 0.77 0.290611
Target:  5'- uGGCACCGCaAAUCGCCACUGGcgagCACg -3'
miRNA:   3'- gUCGUGGUG-UUGGUGGUGGCCua--GUG- -5'
11322 3' -55.3 NC_003084.1 + 73394 0.76 0.335051
Target:  5'- aCGGUAaCGCGgcuucACCugCGCCGGAUCACa -3'
miRNA:   3'- -GUCGUgGUGU-----UGGugGUGGCCUAGUG- -5'
11322 3' -55.3 NC_003084.1 + 48963 0.73 0.446457
Target:  5'- ---aACCAaaaaguuCAACCACCACCGGGUgGCg -3'
miRNA:   3'- gucgUGGU-------GUUGGUGGUGGCCUAgUG- -5'
11322 3' -55.3 NC_003084.1 + 34152 0.73 0.476169
Target:  5'- cCAGUACCACGACCACUAaCGGGa--- -3'
miRNA:   3'- -GUCGUGGUGUUGGUGGUgGCCUagug -5'
11322 3' -55.3 NC_003084.1 + 96438 0.72 0.505829
Target:  5'- aCAGuCGCCGCcACCACCAUCGGuacCAUu -3'
miRNA:   3'- -GUC-GUGGUGuUGGUGGUGGCCua-GUG- -5'
11322 3' -55.3 NC_003084.1 + 80064 0.72 0.505829
Target:  5'- -uGCACUACAuUUACCACCGGAUUcCg -3'
miRNA:   3'- guCGUGGUGUuGGUGGUGGCCUAGuG- -5'
11322 3' -55.3 NC_003084.1 + 75022 0.72 0.536253
Target:  5'- -cGCACCACAACacgauuggUACCAuggccCCGGGUUACg -3'
miRNA:   3'- guCGUGGUGUUG--------GUGGU-----GGCCUAGUG- -5'
11322 3' -55.3 NC_003084.1 + 70234 0.71 0.556886
Target:  5'- -cGUAgCACAGCCaACCGCCGGuacUCAUg -3'
miRNA:   3'- guCGUgGUGUUGG-UGGUGGCCu--AGUG- -5'
11322 3' -55.3 NC_003084.1 + 96606 0.71 0.567289
Target:  5'- gCGGCugCGCGACCGgUugggACgGGGUCGCa -3'
miRNA:   3'- -GUCGugGUGUUGGUgG----UGgCCUAGUG- -5'
11322 3' -55.3 NC_003084.1 + 106835 0.71 0.577741
Target:  5'- gCGGUugUcCAGCUugCACCGGGUcCACg -3'
miRNA:   3'- -GUCGugGuGUUGGugGUGGCCUA-GUG- -5'
11322 3' -55.3 NC_003084.1 + 49667 0.71 0.588234
Target:  5'- uGGCACCACcACCccaGCuCACCGGuacggcUCACa -3'
miRNA:   3'- gUCGUGGUGuUGG---UG-GUGGCCu-----AGUG- -5'
11322 3' -55.3 NC_003084.1 + 41007 0.71 0.598761
Target:  5'- uGGCGCCACAA-CACCACCuauauaacgauGGAcgCGCg -3'
miRNA:   3'- gUCGUGGUGUUgGUGGUGG-----------CCUa-GUG- -5'
11322 3' -55.3 NC_003084.1 + 66557 0.7 0.630469
Target:  5'- aCAGCgguagACCugG-CCACCGCCGG-UCAa -3'
miRNA:   3'- -GUCG-----UGGugUuGGUGGUGGCCuAGUg -5'
11322 3' -55.3 NC_003084.1 + 64165 0.7 0.630469
Target:  5'- gAGCACUugGGCUACCuguAUCGGGUaCACc -3'
miRNA:   3'- gUCGUGGugUUGGUGG---UGGCCUA-GUG- -5'
11322 3' -55.3 NC_003084.1 + 44990 0.7 0.641052
Target:  5'- -uGCACCGuuaugaauCCACCACCGGAggaGCg -3'
miRNA:   3'- guCGUGGUguu-----GGUGGUGGCCUag-UG- -5'
11322 3' -55.3 NC_003084.1 + 2098 0.7 0.641052
Target:  5'- cCAGCACCaACAGCC-CCGCCcg--CACa -3'
miRNA:   3'- -GUCGUGG-UGUUGGuGGUGGccuaGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.