Results 1 - 20 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11322 | 3' | -55.3 | NC_003084.1 | + | 59232 | 0.67 | 0.811928 |
Target: 5'- aGGaacaACCGCAACCACCACC---UCAg -3' miRNA: 3'- gUCg---UGGUGUUGGUGGUGGccuAGUg -5' |
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11322 | 3' | -55.3 | NC_003084.1 | + | 38655 | 0.69 | 0.683218 |
Target: 5'- gCAGC-CCACAaauGCCAUagcucgACCGGAUCGg -3' miRNA: 3'- -GUCGuGGUGU---UGGUGg-----UGGCCUAGUg -5' |
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11322 | 3' | -55.3 | NC_003084.1 | + | 100973 | 0.68 | 0.744909 |
Target: 5'- gCAGuCACCACcACCGCCGCCaccacCACa -3' miRNA: 3'- -GUC-GUGGUGuUGGUGGUGGccua-GUG- -5' |
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11322 | 3' | -55.3 | NC_003084.1 | + | 70149 | 0.68 | 0.754881 |
Target: 5'- -cGCACCAUggUCACCAugUCGGGgccCACc -3' miRNA: 3'- guCGUGGUGuuGGUGGU--GGCCUa--GUG- -5' |
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11322 | 3' | -55.3 | NC_003084.1 | + | 43465 | 0.68 | 0.764737 |
Target: 5'- -uGUGCCGCAuugGCCACCGCCGc--CACc -3' miRNA: 3'- guCGUGGUGU---UGGUGGUGGCcuaGUG- -5' |
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11322 | 3' | -55.3 | NC_003084.1 | + | 61333 | 0.68 | 0.764737 |
Target: 5'- uGGUgaGCCACGgguugGCCgcACCGCCGGG-CACa -3' miRNA: 3'- gUCG--UGGUGU-----UGG--UGGUGGCCUaGUG- -5' |
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11322 | 3' | -55.3 | NC_003084.1 | + | 79962 | 0.68 | 0.764737 |
Target: 5'- gGGCACCgguggACAACCugGCCgACCGGuUCAa -3' miRNA: 3'- gUCGUGG-----UGUUGG--UGG-UGGCCuAGUg -5' |
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11322 | 3' | -55.3 | NC_003084.1 | + | 59902 | 0.67 | 0.78406 |
Target: 5'- uCGGauuuGCCAUAcucACCACCACCGGugaGCu -3' miRNA: 3'- -GUCg---UGGUGU---UGGUGGUGGCCuagUG- -5' |
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11322 | 3' | -55.3 | NC_003084.1 | + | 96502 | 0.67 | 0.802801 |
Target: 5'- cUAGCGCCACGaacgcucgcccaACCACCACC---UCAg -3' miRNA: 3'- -GUCGUGGUGU------------UGGUGGUGGccuAGUg -5' |
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11322 | 3' | -55.3 | NC_003084.1 | + | 54788 | 0.69 | 0.67272 |
Target: 5'- cCGGCugCACAcCuCACCGuCCGGG-CGCa -3' miRNA: 3'- -GUCGugGUGUuG-GUGGU-GGCCUaGUG- -5' |
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11322 | 3' | -55.3 | NC_003084.1 | + | 2098 | 0.7 | 0.641052 |
Target: 5'- cCAGCACCaACAGCC-CCGCCcg--CACa -3' miRNA: 3'- -GUCGUGG-UGUUGGuGGUGGccuaGUG- -5' |
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11322 | 3' | -55.3 | NC_003084.1 | + | 106835 | 0.71 | 0.577741 |
Target: 5'- gCGGUugUcCAGCUugCACCGGGUcCACg -3' miRNA: 3'- -GUCGugGuGUUGGugGUGGCCUA-GUG- -5' |
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11322 | 3' | -55.3 | NC_003084.1 | + | 35401 | 0.77 | 0.290611 |
Target: 5'- uGGCACCGCaAAUCGCCACUGGcgagCACg -3' miRNA: 3'- gUCGUGGUG-UUGGUGGUGGCCua--GUG- -5' |
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11322 | 3' | -55.3 | NC_003084.1 | + | 102059 | 0.77 | 0.290611 |
Target: 5'- gGGCACgUACGACCACCuguACCGGGUgGCc -3' miRNA: 3'- gUCGUG-GUGUUGGUGG---UGGCCUAgUG- -5' |
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11322 | 3' | -55.3 | NC_003084.1 | + | 73394 | 0.76 | 0.335051 |
Target: 5'- aCGGUAaCGCGgcuucACCugCGCCGGAUCACa -3' miRNA: 3'- -GUCGUgGUGU-----UGGugGUGGCCUAGUG- -5' |
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11322 | 3' | -55.3 | NC_003084.1 | + | 48963 | 0.73 | 0.446457 |
Target: 5'- ---aACCAaaaaguuCAACCACCACCGGGUgGCg -3' miRNA: 3'- gucgUGGU-------GUUGGUGGUGGCCUAgUG- -5' |
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11322 | 3' | -55.3 | NC_003084.1 | + | 34152 | 0.73 | 0.476169 |
Target: 5'- cCAGUACCACGACCACUAaCGGGa--- -3' miRNA: 3'- -GUCGUGGUGUUGGUGGUgGCCUagug -5' |
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11322 | 3' | -55.3 | NC_003084.1 | + | 80064 | 0.72 | 0.505829 |
Target: 5'- -uGCACUACAuUUACCACCGGAUUcCg -3' miRNA: 3'- guCGUGGUGUuGGUGGUGGCCUAGuG- -5' |
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11322 | 3' | -55.3 | NC_003084.1 | + | 96438 | 0.72 | 0.505829 |
Target: 5'- aCAGuCGCCGCcACCACCAUCGGuacCAUu -3' miRNA: 3'- -GUC-GUGGUGuUGGUGGUGGCCua-GUG- -5' |
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11322 | 3' | -55.3 | NC_003084.1 | + | 70234 | 0.71 | 0.556886 |
Target: 5'- -cGUAgCACAGCCaACCGCCGGuacUCAUg -3' miRNA: 3'- guCGUgGUGUUGG-UGGUGGCCu--AGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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