miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11322 3' -55.3 NC_003084.1 + 28547 1.1 0.001878
Target:  5'- uCAGCACCACAACCACCACCGGAUCACg -3'
miRNA:   3'- -GUCGUGGUGUUGGUGGUGGCCUAGUG- -5'
11322 3' -55.3 NC_003084.1 + 59527 0.67 0.811928
Target:  5'- -uGCACC-C-ACCACC-CCaGAUCACc -3'
miRNA:   3'- guCGUGGuGuUGGUGGuGGcCUAGUG- -5'
11322 3' -55.3 NC_003084.1 + 3433 0.67 0.82088
Target:  5'- gCAGCACCAgCAG-CACCAgCGGAg--- -3'
miRNA:   3'- -GUCGUGGU-GUUgGUGGUgGCCUagug -5'
11322 3' -55.3 NC_003084.1 + 97922 0.66 0.877956
Target:  5'- -cGCACgGCuugGCCaACCACUGGugcgguUCACg -3'
miRNA:   3'- guCGUGgUGu--UGG-UGGUGGCCu-----AGUG- -5'
11322 3' -55.3 NC_003084.1 + 49667 0.71 0.588234
Target:  5'- uGGCACCACcACCccaGCuCACCGGuacggcUCACa -3'
miRNA:   3'- gUCGUGGUGuUGG---UG-GUGGCCu-----AGUG- -5'
11322 3' -55.3 NC_003084.1 + 41007 0.71 0.598761
Target:  5'- uGGCGCCACAA-CACCACCuauauaacgauGGAcgCGCg -3'
miRNA:   3'- gUCGUGGUGUUgGUGGUGG-----------CCUa-GUG- -5'
11322 3' -55.3 NC_003084.1 + 64165 0.7 0.630469
Target:  5'- gAGCACUugGGCUACCuguAUCGGGUaCACc -3'
miRNA:   3'- gUCGUGGugUUGGUGG---UGGCCUA-GUG- -5'
11322 3' -55.3 NC_003084.1 + 44990 0.7 0.641052
Target:  5'- -uGCACCGuuaugaauCCACCACCGGAggaGCg -3'
miRNA:   3'- guCGUGGUguu-----GGUGGUGGCCUag-UG- -5'
11322 3' -55.3 NC_003084.1 + 98235 0.69 0.714401
Target:  5'- ---gGCCAC-ACCACCGcCCGGuGUCACc -3'
miRNA:   3'- gucgUGGUGuUGGUGGU-GGCC-UAGUG- -5'
11322 3' -55.3 NC_003084.1 + 91683 0.67 0.793508
Target:  5'- cCAaCACCACAACUgcgagGCCAacuCCGGcUCACa -3'
miRNA:   3'- -GUcGUGGUGUUGG-----UGGU---GGCCuAGUG- -5'
11322 3' -55.3 NC_003084.1 + 81444 0.68 0.774466
Target:  5'- aGGCuaucuUCGCAAUCAucuCCGCCGGGUUAUg -3'
miRNA:   3'- gUCGu----GGUGUUGGU---GGUGGCCUAGUG- -5'
11322 3' -55.3 NC_003084.1 + 53517 0.69 0.69367
Target:  5'- gCAGCGCgGCuuccaaaccuCCACCAUCGcGUCACg -3'
miRNA:   3'- -GUCGUGgUGuu--------GGUGGUGGCcUAGUG- -5'
11322 3' -55.3 NC_003084.1 + 54487 0.77 0.290611
Target:  5'- -cGCACCACu-CCACCuCCGGGUCGa -3'
miRNA:   3'- guCGUGGUGuuGGUGGuGGCCUAGUg -5'
11322 3' -55.3 NC_003084.1 + 107387 0.67 0.78406
Target:  5'- uGGCACUGCAgcgaGCUACCACCGaGAa--- -3'
miRNA:   3'- gUCGUGGUGU----UGGUGGUGGC-CUagug -5'
11322 3' -55.3 NC_003084.1 + 75022 0.72 0.536253
Target:  5'- -cGCACCACAACacgauuggUACCAuggccCCGGGUUACg -3'
miRNA:   3'- guCGUGGUGUUG--------GUGGU-----GGCCUAGUG- -5'
11322 3' -55.3 NC_003084.1 + 43518 0.7 0.641052
Target:  5'- gAGCACCugGACgGCCGCUuuGGA-UACg -3'
miRNA:   3'- gUCGUGGugUUGgUGGUGG--CCUaGUG- -5'
11322 3' -55.3 NC_003084.1 + 71866 0.67 0.78406
Target:  5'- -cGCACCACugguACCACCuggaGGAUCu- -3'
miRNA:   3'- guCGUGGUGu---UGGUGGugg-CCUAGug -5'
11322 3' -55.3 NC_003084.1 + 53016 0.67 0.811928
Target:  5'- gCAGCACCACcugGGCuCGCgGUCGuGGUCACg -3'
miRNA:   3'- -GUCGUGGUG---UUG-GUGgUGGC-CUAGUG- -5'
11322 3' -55.3 NC_003084.1 + 96606 0.71 0.567289
Target:  5'- gCGGCugCGCGACCGgUugggACgGGGUCGCa -3'
miRNA:   3'- -GUCGugGUGUUGGUgG----UGgCCUAGUG- -5'
11322 3' -55.3 NC_003084.1 + 66557 0.7 0.630469
Target:  5'- aCAGCgguagACCugG-CCACCGCCGG-UCAa -3'
miRNA:   3'- -GUCG-----UGGugUuGGUGGUGGCCuAGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.