Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11326 | 3' | -57.2 | NC_003084.1 | + | 2254 | 0.66 | 0.767747 |
Target: 5'- aACUAGCCGCAcagcuccaauguuguGCGGGCgGGgcuguuggugcugGACaCCUCg -3' miRNA: 3'- -UGGUUGGCGU---------------CGCCUGgCU-------------UUG-GGAG- -5' |
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11326 | 3' | -57.2 | NC_003084.1 | + | 12181 | 0.66 | 0.755169 |
Target: 5'- cGCCAACCcCGGCGuACUGAAcaacGCCUUUg -3' miRNA: 3'- -UGGUUGGcGUCGCcUGGCUU----UGGGAG- -5' |
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11326 | 3' | -57.2 | NC_003084.1 | + | 17212 | 0.67 | 0.725453 |
Target: 5'- cGCCGuacGCCGCgAGCGGcACCGG--UCCUg -3' miRNA: 3'- -UGGU---UGGCG-UCGCC-UGGCUuuGGGAg -5' |
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11326 | 3' | -57.2 | NC_003084.1 | + | 17615 | 0.69 | 0.601633 |
Target: 5'- gAUCAACCGCacgGGCuGGACCGAuGACCa-- -3' miRNA: 3'- -UGGUUGGCG---UCG-CCUGGCU-UUGGgag -5' |
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11326 | 3' | -57.2 | NC_003084.1 | + | 17660 | 0.7 | 0.52997 |
Target: 5'- cACCGACCGU--CGGugCacGACCCUCa -3' miRNA: 3'- -UGGUUGGCGucGCCugGcuUUGGGAG- -5' |
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11326 | 3' | -57.2 | NC_003084.1 | + | 17833 | 0.66 | 0.793172 |
Target: 5'- aGuuGGCCGUAcGUGGACgGcacGCCCUCg -3' miRNA: 3'- -UggUUGGCGU-CGCCUGgCuu-UGGGAG- -5' |
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11326 | 3' | -57.2 | NC_003084.1 | + | 26793 | 0.72 | 0.46166 |
Target: 5'- cGCCcgGACCGUAGCuGGACCacgGAAACCagCUCa -3' miRNA: 3'- -UGG--UUGGCGUCG-CCUGG---CUUUGG--GAG- -5' |
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11326 | 3' | -57.2 | NC_003084.1 | + | 30443 | 0.68 | 0.664033 |
Target: 5'- cGCCAACUGCcGCuaACgCGAAuuGCCCUCg -3' miRNA: 3'- -UGGUUGGCGuCGccUG-GCUU--UGGGAG- -5' |
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11326 | 3' | -57.2 | NC_003084.1 | + | 30486 | 0.72 | 0.424766 |
Target: 5'- gGCCAACUcgGGCGGACCGcAAcucACCUUCg -3' miRNA: 3'- -UGGUUGGcgUCGCCUGGC-UU---UGGGAG- -5' |
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11326 | 3' | -57.2 | NC_003084.1 | + | 31358 | 0.7 | 0.550189 |
Target: 5'- aGCCGauaaACUGCAGCccGGAucCCGAAACCgUCc -3' miRNA: 3'- -UGGU----UGGCGUCG--CCU--GGCUUUGGgAG- -5' |
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11326 | 3' | -57.2 | NC_003084.1 | + | 31402 | 0.66 | 0.764862 |
Target: 5'- gACCcACUGuUGGCGGACCGGAuaaACaCCUg -3' miRNA: 3'- -UGGuUGGC-GUCGCCUGGCUU---UG-GGAg -5' |
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11326 | 3' | -57.2 | NC_003084.1 | + | 32486 | 0.68 | 0.673355 |
Target: 5'- cGCUaAACC-CGGCGGACCGcauaagcGAGCCgUCa -3' miRNA: 3'- -UGG-UUGGcGUCGCCUGGC-------UUUGGgAG- -5' |
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11326 | 3' | -57.2 | NC_003084.1 | + | 36139 | 0.69 | 0.580935 |
Target: 5'- -gUAACgGCAGCGGGCCacGAuuuGGCCCUa -3' miRNA: 3'- ugGUUGgCGUCGCCUGG--CU---UUGGGAg -5' |
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11326 | 3' | -57.2 | NC_003084.1 | + | 38454 | 0.72 | 0.46166 |
Target: 5'- cGCCGACUGCuGCGGAaUCGAuugcaAGCCCa- -3' miRNA: 3'- -UGGUUGGCGuCGCCU-GGCU-----UUGGGag -5' |
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11326 | 3' | -57.2 | NC_003084.1 | + | 39796 | 1.08 | 0.001669 |
Target: 5'- gACCAACCGCAGCGGACCGAAACCCUCc -3' miRNA: 3'- -UGGUUGGCGUCGCCUGGCUUUGGGAG- -5' |
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11326 | 3' | -57.2 | NC_003084.1 | + | 43570 | 0.66 | 0.774434 |
Target: 5'- uGCC-ACCGCGGaacgGGACC---GCCUUCg -3' miRNA: 3'- -UGGuUGGCGUCg---CCUGGcuuUGGGAG- -5' |
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11326 | 3' | -57.2 | NC_003084.1 | + | 45997 | 0.67 | 0.715368 |
Target: 5'- aGCCAACUGCAGCc--CCGGguccAGCCCa- -3' miRNA: 3'- -UGGUUGGCGUCGccuGGCU----UUGGGag -5' |
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11326 | 3' | -57.2 | NC_003084.1 | + | 46067 | 0.66 | 0.793172 |
Target: 5'- uCCAACCGaGGCGGGCCcaacuucuucGAcGACCC-Ca -3' miRNA: 3'- uGGUUGGCgUCGCCUGG----------CU-UUGGGaG- -5' |
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11326 | 3' | -57.2 | NC_003084.1 | + | 61808 | 0.68 | 0.684711 |
Target: 5'- cUCAGuCUGCGGCGGAUUGuccACCUUCa -3' miRNA: 3'- uGGUU-GGCGUCGCCUGGCuu-UGGGAG- -5' |
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11326 | 3' | -57.2 | NC_003084.1 | + | 65323 | 0.66 | 0.802321 |
Target: 5'- aACCAgaugGCCguGCAGCuGACCGgcGCUCUa -3' miRNA: 3'- -UGGU----UGG--CGUCGcCUGGCuuUGGGAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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