Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11326 | 3' | -57.2 | NC_003084.1 | + | 39796 | 1.08 | 0.001669 |
Target: 5'- gACCAACCGCAGCGGACCGAAACCCUCc -3' miRNA: 3'- -UGGUUGGCGUCGCCUGGCUUUGGGAG- -5' |
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11326 | 3' | -57.2 | NC_003084.1 | + | 97912 | 0.73 | 0.406991 |
Target: 5'- gGCCAACCacuGguGCGGuucacGCCGuucACCCUCg -3' miRNA: 3'- -UGGUUGG---CguCGCC-----UGGCuu-UGGGAG- -5' |
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11326 | 3' | -57.2 | NC_003084.1 | + | 71300 | 0.72 | 0.415821 |
Target: 5'- uCCAACaGCAGCGGGCUcacAAACUCUCg -3' miRNA: 3'- uGGUUGgCGUCGCCUGGc--UUUGGGAG- -5' |
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11326 | 3' | -57.2 | NC_003084.1 | + | 30486 | 0.72 | 0.424766 |
Target: 5'- gGCCAACUcgGGCGGACCGcAAcucACCUUCg -3' miRNA: 3'- -UGGUUGGcgUCGCCUGGC-UU---UGGGAG- -5' |
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11326 | 3' | -57.2 | NC_003084.1 | + | 26793 | 0.72 | 0.46166 |
Target: 5'- cGCCcgGACCGUAGCuGGACCacgGAAACCagCUCa -3' miRNA: 3'- -UGG--UUGGCGUCG-CCUGG---CUUUGG--GAG- -5' |
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11326 | 3' | -57.2 | NC_003084.1 | + | 38454 | 0.72 | 0.46166 |
Target: 5'- cGCCGACUGCuGCGGAaUCGAuugcaAGCCCa- -3' miRNA: 3'- -UGGUUGGCGuCGCCU-GGCU-----UUGGGag -5' |
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11326 | 3' | -57.2 | NC_003084.1 | + | 85184 | 0.71 | 0.490409 |
Target: 5'- cCCAACCGCGGUGGuuCGAuuUCCg- -3' miRNA: 3'- uGGUUGGCGUCGCCugGCUuuGGGag -5' |
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11326 | 3' | -57.2 | NC_003084.1 | + | 17660 | 0.7 | 0.52997 |
Target: 5'- cACCGACCGU--CGGugCacGACCCUCa -3' miRNA: 3'- -UGGUUGGCGucGCCugGcuUUGGGAG- -5' |
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11326 | 3' | -57.2 | NC_003084.1 | + | 31358 | 0.7 | 0.550189 |
Target: 5'- aGCCGauaaACUGCAGCccGGAucCCGAAACCgUCc -3' miRNA: 3'- -UGGU----UGGCGUCG--CCU--GGCUUUGGgAG- -5' |
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11326 | 3' | -57.2 | NC_003084.1 | + | 88711 | 0.7 | 0.560388 |
Target: 5'- gACCAACUGguGCc-GCUGAAGCCCaUCa -3' miRNA: 3'- -UGGUUGGCguCGccUGGCUUUGGG-AG- -5' |
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11326 | 3' | -57.2 | NC_003084.1 | + | 36139 | 0.69 | 0.580935 |
Target: 5'- -gUAACgGCAGCGGGCCacGAuuuGGCCCUa -3' miRNA: 3'- ugGUUGgCGUCGCCUGG--CU---UUGGGAg -5' |
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11326 | 3' | -57.2 | NC_003084.1 | + | 17615 | 0.69 | 0.601633 |
Target: 5'- gAUCAACCGCacgGGCuGGACCGAuGACCa-- -3' miRNA: 3'- -UGGUUGGCG---UCG-CCUGGCU-UUGGgag -5' |
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11326 | 3' | -57.2 | NC_003084.1 | + | 99099 | 0.69 | 0.622425 |
Target: 5'- gGCCA--CGUuGUGGACCGAAgcGCCCUa -3' miRNA: 3'- -UGGUugGCGuCGCCUGGCUU--UGGGAg -5' |
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11326 | 3' | -57.2 | NC_003084.1 | + | 30443 | 0.68 | 0.664033 |
Target: 5'- cGCCAACUGCcGCuaACgCGAAuuGCCCUCg -3' miRNA: 3'- -UGGUUGGCGuCGccUG-GCUU--UGGGAG- -5' |
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11326 | 3' | -57.2 | NC_003084.1 | + | 32486 | 0.68 | 0.673355 |
Target: 5'- cGCUaAACC-CGGCGGACCGcauaagcGAGCCgUCa -3' miRNA: 3'- -UGG-UUGGcGUCGCCUGGC-------UUUGGgAG- -5' |
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11326 | 3' | -57.2 | NC_003084.1 | + | 80266 | 0.68 | 0.684711 |
Target: 5'- cACCAGCgccuUGCaucuaGGUGGACCGAGAgCCCa- -3' miRNA: 3'- -UGGUUG----GCG-----UCGCCUGGCUUU-GGGag -5' |
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11326 | 3' | -57.2 | NC_003084.1 | + | 61808 | 0.68 | 0.684711 |
Target: 5'- cUCAGuCUGCGGCGGAUUGuccACCUUCa -3' miRNA: 3'- uGGUU-GGCGUCGCCUGGCuu-UGGGAG- -5' |
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11326 | 3' | -57.2 | NC_003084.1 | + | 45997 | 0.67 | 0.715368 |
Target: 5'- aGCCAACUGCAGCc--CCGGguccAGCCCa- -3' miRNA: 3'- -UGGUUGGCGUCGccuGGCU----UUGGGag -5' |
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11326 | 3' | -57.2 | NC_003084.1 | + | 17212 | 0.67 | 0.725453 |
Target: 5'- cGCCGuacGCCGCgAGCGGcACCGG--UCCUg -3' miRNA: 3'- -UGGU---UGGCG-UCGCC-UGGCUuuGGGAg -5' |
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11326 | 3' | -57.2 | NC_003084.1 | + | 83973 | 0.67 | 0.735454 |
Target: 5'- cCCGACUcCAGCGGACCaguuaAAGCgCUCu -3' miRNA: 3'- uGGUUGGcGUCGCCUGGc----UUUGgGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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