Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11326 | 3' | -57.2 | NC_003084.1 | + | 67030 | 0.67 | 0.744376 |
Target: 5'- aACCAggcucgggaauacAgUGCAGUauACCGggGCCCUCg -3' miRNA: 3'- -UGGU-------------UgGCGUCGccUGGCuuUGGGAG- -5' |
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11326 | 3' | -57.2 | NC_003084.1 | + | 77850 | 0.66 | 0.755169 |
Target: 5'- cCCAAaaGCGuUGGACCGguACUCUCa -3' miRNA: 3'- uGGUUggCGUcGCCUGGCuuUGGGAG- -5' |
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11326 | 3' | -57.2 | NC_003084.1 | + | 12181 | 0.66 | 0.755169 |
Target: 5'- cGCCAACCcCGGCGuACUGAAcaacGCCUUUg -3' miRNA: 3'- -UGGUUGGcGUCGCcUGGCUU----UGGGAG- -5' |
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11326 | 3' | -57.2 | NC_003084.1 | + | 31402 | 0.66 | 0.764862 |
Target: 5'- gACCcACUGuUGGCGGACCGGAuaaACaCCUg -3' miRNA: 3'- -UGGuUGGC-GUCGCCUGGCUU---UG-GGAg -5' |
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11326 | 3' | -57.2 | NC_003084.1 | + | 2254 | 0.66 | 0.767747 |
Target: 5'- aACUAGCCGCAcagcuccaauguuguGCGGGCgGGgcuguuggugcugGACaCCUCg -3' miRNA: 3'- -UGGUUGGCGU---------------CGCCUGgCU-------------UUG-GGAG- -5' |
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11326 | 3' | -57.2 | NC_003084.1 | + | 100166 | 0.66 | 0.774434 |
Target: 5'- cACUAAUCagaauCAGCGGguuGCCGGAGCUCUUg -3' miRNA: 3'- -UGGUUGGc----GUCGCC---UGGCUUUGGGAG- -5' |
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11326 | 3' | -57.2 | NC_003084.1 | + | 43570 | 0.66 | 0.774434 |
Target: 5'- uGCC-ACCGCGGaacgGGACC---GCCUUCg -3' miRNA: 3'- -UGGuUGGCGUCg---CCUGGcuuUGGGAG- -5' |
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11326 | 3' | -57.2 | NC_003084.1 | + | 81705 | 0.66 | 0.774434 |
Target: 5'- cGCCGuCCGCAGCuucGGAUauaCGu--CCCUCa -3' miRNA: 3'- -UGGUuGGCGUCG---CCUG---GCuuuGGGAG- -5' |
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11326 | 3' | -57.2 | NC_003084.1 | + | 46067 | 0.66 | 0.793172 |
Target: 5'- uCCAACCGaGGCGGGCCcaacuucuucGAcGACCC-Ca -3' miRNA: 3'- uGGUUGGCgUCGCCUGG----------CU-UUGGGaG- -5' |
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11326 | 3' | -57.2 | NC_003084.1 | + | 95078 | 0.66 | 0.793172 |
Target: 5'- uCCAG-CGCaaGGUGGAuCCGGugguGGCCCUCg -3' miRNA: 3'- uGGUUgGCG--UCGCCU-GGCU----UUGGGAG- -5' |
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11326 | 3' | -57.2 | NC_003084.1 | + | 17833 | 0.66 | 0.793172 |
Target: 5'- aGuuGGCCGUAcGUGGACgGcacGCCCUCg -3' miRNA: 3'- -UggUUGGCGU-CGCCUGgCuu-UGGGAG- -5' |
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11326 | 3' | -57.2 | NC_003084.1 | + | 65323 | 0.66 | 0.802321 |
Target: 5'- aACCAgaugGCCguGCAGCuGACCGgcGCUCUa -3' miRNA: 3'- -UGGU----UGG--CGUCGcCUGGCuuUGGGAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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