miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11329 5' -47.4 NC_003084.1 + 61179 0.66 0.998344
Target:  5'- cCGAAGAGUUGguggaCUGCAucgaucCGAGUacgaGAGCc -3'
miRNA:   3'- uGUUUUUCAAC-----GACGU------GCUCAg---CUCG- -5'
11329 5' -47.4 NC_003084.1 + 65710 0.74 0.882692
Target:  5'- -gGAcAAGUUGggGCugGGGUUGAGCu -3'
miRNA:   3'- ugUUuUUCAACgaCGugCUCAGCUCG- -5'
11329 5' -47.4 NC_003084.1 + 68795 0.77 0.742858
Target:  5'- aACAcuGGGUgg--GCACGAGUCGGGCu -3'
miRNA:   3'- -UGUuuUUCAacgaCGUGCUCAGCUCG- -5'
11329 5' -47.4 NC_003084.1 + 69405 0.66 0.999101
Target:  5'- cCAGAAGGUUGUcgGCA-GAGUUGAuGUc -3'
miRNA:   3'- uGUUUUUCAACGa-CGUgCUCAGCU-CG- -5'
11329 5' -47.4 NC_003084.1 + 75801 0.69 0.98827
Target:  5'- uGCAGAAcga-GCUGUACGAG-CGGGUc -3'
miRNA:   3'- -UGUUUUucaaCGACGUGCUCaGCUCG- -5'
11329 5' -47.4 NC_003084.1 + 81990 0.75 0.823092
Target:  5'- -------uUUGgUGCACGAGUUGAGCg -3'
miRNA:   3'- uguuuuucAACgACGUGCUCAGCUCG- -5'
11329 5' -47.4 NC_003084.1 + 83828 0.69 0.98827
Target:  5'- cGCAuguAGAGc-GCUuuaacugguccGCugGAGUCGGGCa -3'
miRNA:   3'- -UGUu--UUUCaaCGA-----------CGugCUCAGCUCG- -5'
11329 5' -47.4 NC_003084.1 + 85217 0.78 0.688571
Target:  5'- cCAAGuccAGGUUGUUGUACaGGUCGAGCu -3'
miRNA:   3'- uGUUU---UUCAACGACGUGcUCAGCUCG- -5'
11329 5' -47.4 NC_003084.1 + 89862 0.67 0.997583
Target:  5'- ----cAAGuUUGCUGUGCG-GUCGAGa -3'
miRNA:   3'- uguuuUUC-AACGACGUGCuCAGCUCg -5'
11329 5' -47.4 NC_003084.1 + 91372 0.67 0.996552
Target:  5'- cGCAGcGAAGUUGCucaaUGUaACGGGgagCGGGCu -3'
miRNA:   3'- -UGUU-UUUCAACG----ACG-UGCUCa--GCUCG- -5'
11329 5' -47.4 NC_003084.1 + 92221 0.66 0.998344
Target:  5'- -uGAAGGGUaaaagUGCACGAGUUGuGCg -3'
miRNA:   3'- ugUUUUUCAacg--ACGUGCUCAGCuCG- -5'
11329 5' -47.4 NC_003084.1 + 92657 0.67 0.995182
Target:  5'- aACGAAAuaugGGUUaGCUGCAgGAGUauaGuGCu -3'
miRNA:   3'- -UGUUUU----UCAA-CGACGUgCUCAg--CuCG- -5'
11329 5' -47.4 NC_003084.1 + 94417 0.69 0.983961
Target:  5'- uACGAAAAGUguaccaucUGUggguaaacuggugGUACGAGUgGAGCg -3'
miRNA:   3'- -UGUUUUUCA--------ACGa------------CGUGCUCAgCUCG- -5'
11329 5' -47.4 NC_003084.1 + 94651 0.67 0.996552
Target:  5'- uGCG--GAGgaGCUGCACucGGcCGAGCa -3'
miRNA:   3'- -UGUuuUUCaaCGACGUGc-UCaGCUCG- -5'
11329 5' -47.4 NC_003084.1 + 99337 0.67 0.997583
Target:  5'- uCAAcAGGUUGC-GCAUGAccucGUcCGAGCg -3'
miRNA:   3'- uGUUuUUCAACGaCGUGCU----CA-GCUCG- -5'
11329 5' -47.4 NC_003084.1 + 101682 0.68 0.994347
Target:  5'- cCAGAAAac-GgUGCACGAGUUGAuGCg -3'
miRNA:   3'- uGUUUUUcaaCgACGUGCUCAGCU-CG- -5'
11329 5' -47.4 NC_003084.1 + 102249 0.71 0.95849
Target:  5'- aACAcccGGUacuauCUGCugGAGUCGGGCa -3'
miRNA:   3'- -UGUuuuUCAac---GACGugCUCAGCUCG- -5'
11329 5' -47.4 NC_003084.1 + 107722 0.71 0.962374
Target:  5'- ---uAAAGUUGgaGUACGAGUguucaucgaucCGAGCa -3'
miRNA:   3'- uguuUUUCAACgaCGUGCUCA-----------GCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.