miRNA display CGI


Results 1 - 20 of 38 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11329 5' -47.4 NC_003084.1 + 492 0.7 0.978042
Target:  5'- cGCGAGGAGUUGCUgaaucgGUACG-GUCGGa- -3'
miRNA:   3'- -UGUUUUUCAACGA------CGUGCuCAGCUcg -5'
11329 5' -47.4 NC_003084.1 + 969 0.69 0.986599
Target:  5'- uGCGAGAAGUUGaagagucaGUACGAGUUGAu- -3'
miRNA:   3'- -UGUUUUUCAACga------CGUGCUCAGCUcg -5'
11329 5' -47.4 NC_003084.1 + 6308 0.7 0.978042
Target:  5'- aACGAAAAGauuUUGgaGCugGAGUUG-GCc -3'
miRNA:   3'- -UGUUUUUC---AACgaCGugCUCAGCuCG- -5'
11329 5' -47.4 NC_003084.1 + 11181 0.7 0.975381
Target:  5'- gAUAAcAAGUUGCUGUACucugcgguGAGU-GAGCg -3'
miRNA:   3'- -UGUUuUUCAACGACGUG--------CUCAgCUCG- -5'
11329 5' -47.4 NC_003084.1 + 12227 0.67 0.995775
Target:  5'- cCAucGAGUUGCUGCGaaucccaaccGUUGAGCu -3'
miRNA:   3'- uGUuuUUCAACGACGUgcu-------CAGCUCG- -5'
11329 5' -47.4 NC_003084.1 + 21144 0.77 0.763847
Target:  5'- uACcAAAAGUUGCcccagucggGCucCGAGUCGAGCg -3'
miRNA:   3'- -UGuUUUUCAACGa--------CGu-GCUCAGCUCG- -5'
11329 5' -47.4 NC_003084.1 + 30346 0.66 0.997993
Target:  5'- gGCGAAgguGAGUUGCgguccGCcCGAGUUG-GCc -3'
miRNA:   3'- -UGUUU---UUCAACGa----CGuGCUCAGCuCG- -5'
11329 5' -47.4 NC_003084.1 + 32067 0.7 0.978042
Target:  5'- ------cGUUGUaGCGcCGGGUCGGGCa -3'
miRNA:   3'- uguuuuuCAACGaCGU-GCUCAGCUCG- -5'
11329 5' -47.4 NC_003084.1 + 32417 0.68 0.989774
Target:  5'- uGCAGGuGGUU-UUGCugGucGUCGAGCg -3'
miRNA:   3'- -UGUUUuUCAAcGACGugCu-CAGCUCG- -5'
11329 5' -47.4 NC_003084.1 + 33415 0.66 0.997993
Target:  5'- uGCGAAcGGUUG-UGCACacGUUGGGCa -3'
miRNA:   3'- -UGUUUuUCAACgACGUGcuCAGCUCG- -5'
11329 5' -47.4 NC_003084.1 + 33472 0.67 0.997105
Target:  5'- uCAucGGGUUGUUGUuaauGUCGAGCg -3'
miRNA:   3'- uGUuuUUCAACGACGugcuCAGCUCG- -5'
11329 5' -47.4 NC_003084.1 + 33889 0.68 0.994347
Target:  5'- uGCAGucAAAGUuuUGCUGCcuaacggugcccACGAGUaUGGGCu -3'
miRNA:   3'- -UGUU--UUUCA--ACGACG------------UGCUCA-GCUCG- -5'
11329 5' -47.4 NC_003084.1 + 35327 0.66 0.997993
Target:  5'- ---uAGAGUUGCgcugaucccacUGCACGA--CGAGCa -3'
miRNA:   3'- uguuUUUCAACG-----------ACGUGCUcaGCUCG- -5'
11329 5' -47.4 NC_003084.1 + 38460 0.68 0.992328
Target:  5'- cCGGGAAGUUG--GC-CGGGUUGAGCc -3'
miRNA:   3'- uGUUUUUCAACgaCGuGCUCAGCUCG- -5'
11329 5' -47.4 NC_003084.1 + 38955 0.67 0.997583
Target:  5'- cGCGGGAAcggGCcGCACGAGcUCGGGg -3'
miRNA:   3'- -UGUUUUUcaaCGaCGUGCUC-AGCUCg -5'
11329 5' -47.4 NC_003084.1 + 39426 0.66 0.997993
Target:  5'- aGCAGcAAGcugcGCUGCuaggACGAGUuuaCGAGCg -3'
miRNA:   3'- -UGUUuUUCaa--CGACG----UGCUCA---GCUCG- -5'
11329 5' -47.4 NC_003084.1 + 41791 1.13 0.007699
Target:  5'- uACAAAAAGUUGCUGCACGAGUCGAGCu -3'
miRNA:   3'- -UGUUUUUCAACGACGUGCUCAGCUCG- -5'
11329 5' -47.4 NC_003084.1 + 46686 0.82 0.459925
Target:  5'- gACAAccuGAAGcUGCUGCugGAGUCGcGCa -3'
miRNA:   3'- -UGUU---UUUCaACGACGugCUCAGCuCG- -5'
11329 5' -47.4 NC_003084.1 + 55913 0.66 0.998344
Target:  5'- gACAGGAAGgcGCUGgA--GGUgGAGCg -3'
miRNA:   3'- -UGUUUUUCaaCGACgUgcUCAgCUCG- -5'
11329 5' -47.4 NC_003084.1 + 59851 0.66 0.998344
Target:  5'- gGCGAGGAGguccgcgcGCUGCACucuAGcuaUCGAGCc -3'
miRNA:   3'- -UGUUUUUCaa------CGACGUGc--UC---AGCUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.