miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11329 5' -47.4 NC_003084.1 + 41791 1.13 0.007699
Target:  5'- uACAAAAAGUUGCUGCACGAGUCGAGCu -3'
miRNA:   3'- -UGUUUUUCAACGACGUGCUCAGCUCG- -5'
11329 5' -47.4 NC_003084.1 + 46686 0.82 0.459925
Target:  5'- gACAAccuGAAGcUGCUGCugGAGUCGcGCa -3'
miRNA:   3'- -UGUU---UUUCaACGACGugCUCAGCuCG- -5'
11329 5' -47.4 NC_003084.1 + 85217 0.78 0.688571
Target:  5'- cCAAGuccAGGUUGUUGUACaGGUCGAGCu -3'
miRNA:   3'- uGUUU---UUCAACGACGUGcUCAGCUCG- -5'
11329 5' -47.4 NC_003084.1 + 68795 0.77 0.742858
Target:  5'- aACAcuGGGUgg--GCACGAGUCGGGCu -3'
miRNA:   3'- -UGUuuUUCAacgaCGUGCUCAGCUCG- -5'
11329 5' -47.4 NC_003084.1 + 21144 0.77 0.763847
Target:  5'- uACcAAAAGUUGCcccagucggGCucCGAGUCGAGCg -3'
miRNA:   3'- -UGuUUUUCAACGa--------CGu-GCUCAGCUCG- -5'
11329 5' -47.4 NC_003084.1 + 81990 0.75 0.823092
Target:  5'- -------uUUGgUGCACGAGUUGAGCg -3'
miRNA:   3'- uguuuuucAACgACGUGCUCAGCUCG- -5'
11329 5' -47.4 NC_003084.1 + 65710 0.74 0.882692
Target:  5'- -gGAcAAGUUGggGCugGGGUUGAGCu -3'
miRNA:   3'- ugUUuUUCAACgaCGugCUCAGCUCG- -5'
11329 5' -47.4 NC_003084.1 + 102249 0.71 0.95849
Target:  5'- aACAcccGGUacuauCUGCugGAGUCGGGCa -3'
miRNA:   3'- -UGUuuuUCAac---GACGugCUCAGCUCG- -5'
11329 5' -47.4 NC_003084.1 + 107722 0.71 0.962374
Target:  5'- ---uAAAGUUGgaGUACGAGUguucaucgaucCGAGCa -3'
miRNA:   3'- uguuUUUCAACgaCGUGCUCA-----------GCUCG- -5'
11329 5' -47.4 NC_003084.1 + 11181 0.7 0.975381
Target:  5'- gAUAAcAAGUUGCUGUACucugcgguGAGU-GAGCg -3'
miRNA:   3'- -UGUUuUUCAACGACGUG--------CUCAgCUCG- -5'
11329 5' -47.4 NC_003084.1 + 6308 0.7 0.978042
Target:  5'- aACGAAAAGauuUUGgaGCugGAGUUG-GCc -3'
miRNA:   3'- -UGUUUUUC---AACgaCGugCUCAGCuCG- -5'
11329 5' -47.4 NC_003084.1 + 492 0.7 0.978042
Target:  5'- cGCGAGGAGUUGCUgaaucgGUACG-GUCGGa- -3'
miRNA:   3'- -UGUUUUUCAACGA------CGUGCuCAGCUcg -5'
11329 5' -47.4 NC_003084.1 + 32067 0.7 0.978042
Target:  5'- ------cGUUGUaGCGcCGGGUCGGGCa -3'
miRNA:   3'- uguuuuuCAACGaCGU-GCUCAGCUCG- -5'
11329 5' -47.4 NC_003084.1 + 94417 0.69 0.983961
Target:  5'- uACGAAAAGUguaccaucUGUggguaaacuggugGUACGAGUgGAGCg -3'
miRNA:   3'- -UGUUUUUCA--------ACGa------------CGUGCUCAgCUCG- -5'
11329 5' -47.4 NC_003084.1 + 969 0.69 0.986599
Target:  5'- uGCGAGAAGUUGaagagucaGUACGAGUUGAu- -3'
miRNA:   3'- -UGUUUUUCAACga------CGUGCUCAGCUcg -5'
11329 5' -47.4 NC_003084.1 + 75801 0.69 0.98827
Target:  5'- uGCAGAAcga-GCUGUACGAG-CGGGUc -3'
miRNA:   3'- -UGUUUUucaaCGACGUGCUCaGCUCG- -5'
11329 5' -47.4 NC_003084.1 + 83828 0.69 0.98827
Target:  5'- cGCAuguAGAGc-GCUuuaacugguccGCugGAGUCGGGCa -3'
miRNA:   3'- -UGUu--UUUCaaCGA-----------CGugCUCAGCUCG- -5'
11329 5' -47.4 NC_003084.1 + 32417 0.68 0.989774
Target:  5'- uGCAGGuGGUU-UUGCugGucGUCGAGCg -3'
miRNA:   3'- -UGUUUuUCAAcGACGugCu-CAGCUCG- -5'
11329 5' -47.4 NC_003084.1 + 38460 0.68 0.992328
Target:  5'- cCGGGAAGUUG--GC-CGGGUUGAGCc -3'
miRNA:   3'- uGUUUUUCAACgaCGuGCUCAGCUCG- -5'
11329 5' -47.4 NC_003084.1 + 33889 0.68 0.994347
Target:  5'- uGCAGucAAAGUuuUGCUGCcuaacggugcccACGAGUaUGGGCu -3'
miRNA:   3'- -UGUU--UUUCA--ACGACG------------UGCUCA-GCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.