Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11329 | 5' | -47.4 | NC_003084.1 | + | 30346 | 0.66 | 0.997993 |
Target: 5'- gGCGAAgguGAGUUGCgguccGCcCGAGUUG-GCc -3' miRNA: 3'- -UGUUU---UUCAACGa----CGuGCUCAGCuCG- -5' |
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11329 | 5' | -47.4 | NC_003084.1 | + | 91372 | 0.67 | 0.996552 |
Target: 5'- cGCAGcGAAGUUGCucaaUGUaACGGGgagCGGGCu -3' miRNA: 3'- -UGUU-UUUCAACG----ACG-UGCUCa--GCUCG- -5' |
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11329 | 5' | -47.4 | NC_003084.1 | + | 94651 | 0.67 | 0.996552 |
Target: 5'- uGCG--GAGgaGCUGCACucGGcCGAGCa -3' miRNA: 3'- -UGUuuUUCaaCGACGUGc-UCaGCUCG- -5' |
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11329 | 5' | -47.4 | NC_003084.1 | + | 33472 | 0.67 | 0.997105 |
Target: 5'- uCAucGGGUUGUUGUuaauGUCGAGCg -3' miRNA: 3'- uGUuuUUCAACGACGugcuCAGCUCG- -5' |
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11329 | 5' | -47.4 | NC_003084.1 | + | 99337 | 0.67 | 0.997583 |
Target: 5'- uCAAcAGGUUGC-GCAUGAccucGUcCGAGCg -3' miRNA: 3'- uGUUuUUCAACGaCGUGCU----CA-GCUCG- -5' |
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11329 | 5' | -47.4 | NC_003084.1 | + | 38955 | 0.67 | 0.997583 |
Target: 5'- cGCGGGAAcggGCcGCACGAGcUCGGGg -3' miRNA: 3'- -UGUUUUUcaaCGaCGUGCUC-AGCUCg -5' |
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11329 | 5' | -47.4 | NC_003084.1 | + | 35327 | 0.66 | 0.997993 |
Target: 5'- ---uAGAGUUGCgcugaucccacUGCACGA--CGAGCa -3' miRNA: 3'- uguuUUUCAACG-----------ACGUGCUcaGCUCG- -5' |
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11329 | 5' | -47.4 | NC_003084.1 | + | 33415 | 0.66 | 0.997993 |
Target: 5'- uGCGAAcGGUUG-UGCACacGUUGGGCa -3' miRNA: 3'- -UGUUUuUCAACgACGUGcuCAGCUCG- -5' |
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11329 | 5' | -47.4 | NC_003084.1 | + | 39426 | 0.66 | 0.997993 |
Target: 5'- aGCAGcAAGcugcGCUGCuaggACGAGUuuaCGAGCg -3' miRNA: 3'- -UGUUuUUCaa--CGACG----UGCUCA---GCUCG- -5' |
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11329 | 5' | -47.4 | NC_003084.1 | + | 92657 | 0.67 | 0.995182 |
Target: 5'- aACGAAAuaugGGUUaGCUGCAgGAGUauaGuGCu -3' miRNA: 3'- -UGUUUU----UCAA-CGACGUgCUCAg--CuCG- -5' |
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11329 | 5' | -47.4 | NC_003084.1 | + | 101682 | 0.68 | 0.994347 |
Target: 5'- cCAGAAAac-GgUGCACGAGUUGAuGCg -3' miRNA: 3'- uGUUUUUcaaCgACGUGCUCAGCU-CG- -5' |
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11329 | 5' | -47.4 | NC_003084.1 | + | 33889 | 0.68 | 0.994347 |
Target: 5'- uGCAGucAAAGUuuUGCUGCcuaacggugcccACGAGUaUGGGCu -3' miRNA: 3'- -UGUU--UUUCA--ACGACG------------UGCUCA-GCUCG- -5' |
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11329 | 5' | -47.4 | NC_003084.1 | + | 85217 | 0.78 | 0.688571 |
Target: 5'- cCAAGuccAGGUUGUUGUACaGGUCGAGCu -3' miRNA: 3'- uGUUU---UUCAACGACGUGcUCAGCUCG- -5' |
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11329 | 5' | -47.4 | NC_003084.1 | + | 21144 | 0.77 | 0.763847 |
Target: 5'- uACcAAAAGUUGCcccagucggGCucCGAGUCGAGCg -3' miRNA: 3'- -UGuUUUUCAACGa--------CGu-GCUCAGCUCG- -5' |
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11329 | 5' | -47.4 | NC_003084.1 | + | 102249 | 0.71 | 0.95849 |
Target: 5'- aACAcccGGUacuauCUGCugGAGUCGGGCa -3' miRNA: 3'- -UGUuuuUCAac---GACGugCUCAGCUCG- -5' |
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11329 | 5' | -47.4 | NC_003084.1 | + | 11181 | 0.7 | 0.975381 |
Target: 5'- gAUAAcAAGUUGCUGUACucugcgguGAGU-GAGCg -3' miRNA: 3'- -UGUUuUUCAACGACGUG--------CUCAgCUCG- -5' |
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11329 | 5' | -47.4 | NC_003084.1 | + | 94417 | 0.69 | 0.983961 |
Target: 5'- uACGAAAAGUguaccaucUGUggguaaacuggugGUACGAGUgGAGCg -3' miRNA: 3'- -UGUUUUUCA--------ACGa------------CGUGCUCAgCUCG- -5' |
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11329 | 5' | -47.4 | NC_003084.1 | + | 83828 | 0.69 | 0.98827 |
Target: 5'- cGCAuguAGAGc-GCUuuaacugguccGCugGAGUCGGGCa -3' miRNA: 3'- -UGUu--UUUCaaCGA-----------CGugCUCAGCUCG- -5' |
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11329 | 5' | -47.4 | NC_003084.1 | + | 32417 | 0.68 | 0.989774 |
Target: 5'- uGCAGGuGGUU-UUGCugGucGUCGAGCg -3' miRNA: 3'- -UGUUUuUCAAcGACGugCu-CAGCUCG- -5' |
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11329 | 5' | -47.4 | NC_003084.1 | + | 38460 | 0.68 | 0.992328 |
Target: 5'- cCGGGAAGUUG--GC-CGGGUUGAGCc -3' miRNA: 3'- uGUUUUUCAACgaCGuGCUCAGCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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