Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11329 | 5' | -47.4 | NC_003084.1 | + | 107722 | 0.71 | 0.962374 |
Target: 5'- ---uAAAGUUGgaGUACGAGUguucaucgaucCGAGCa -3' miRNA: 3'- uguuUUUCAACgaCGUGCUCA-----------GCUCG- -5' |
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11329 | 5' | -47.4 | NC_003084.1 | + | 102249 | 0.71 | 0.95849 |
Target: 5'- aACAcccGGUacuauCUGCugGAGUCGGGCa -3' miRNA: 3'- -UGUuuuUCAac---GACGugCUCAGCUCG- -5' |
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11329 | 5' | -47.4 | NC_003084.1 | + | 101682 | 0.68 | 0.994347 |
Target: 5'- cCAGAAAac-GgUGCACGAGUUGAuGCg -3' miRNA: 3'- uGUUUUUcaaCgACGUGCUCAGCU-CG- -5' |
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11329 | 5' | -47.4 | NC_003084.1 | + | 99337 | 0.67 | 0.997583 |
Target: 5'- uCAAcAGGUUGC-GCAUGAccucGUcCGAGCg -3' miRNA: 3'- uGUUuUUCAACGaCGUGCU----CA-GCUCG- -5' |
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11329 | 5' | -47.4 | NC_003084.1 | + | 94651 | 0.67 | 0.996552 |
Target: 5'- uGCG--GAGgaGCUGCACucGGcCGAGCa -3' miRNA: 3'- -UGUuuUUCaaCGACGUGc-UCaGCUCG- -5' |
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11329 | 5' | -47.4 | NC_003084.1 | + | 94417 | 0.69 | 0.983961 |
Target: 5'- uACGAAAAGUguaccaucUGUggguaaacuggugGUACGAGUgGAGCg -3' miRNA: 3'- -UGUUUUUCA--------ACGa------------CGUGCUCAgCUCG- -5' |
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11329 | 5' | -47.4 | NC_003084.1 | + | 92657 | 0.67 | 0.995182 |
Target: 5'- aACGAAAuaugGGUUaGCUGCAgGAGUauaGuGCu -3' miRNA: 3'- -UGUUUU----UCAA-CGACGUgCUCAg--CuCG- -5' |
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11329 | 5' | -47.4 | NC_003084.1 | + | 92221 | 0.66 | 0.998344 |
Target: 5'- -uGAAGGGUaaaagUGCACGAGUUGuGCg -3' miRNA: 3'- ugUUUUUCAacg--ACGUGCUCAGCuCG- -5' |
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11329 | 5' | -47.4 | NC_003084.1 | + | 91372 | 0.67 | 0.996552 |
Target: 5'- cGCAGcGAAGUUGCucaaUGUaACGGGgagCGGGCu -3' miRNA: 3'- -UGUU-UUUCAACG----ACG-UGCUCa--GCUCG- -5' |
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11329 | 5' | -47.4 | NC_003084.1 | + | 89862 | 0.67 | 0.997583 |
Target: 5'- ----cAAGuUUGCUGUGCG-GUCGAGa -3' miRNA: 3'- uguuuUUC-AACGACGUGCuCAGCUCg -5' |
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11329 | 5' | -47.4 | NC_003084.1 | + | 85217 | 0.78 | 0.688571 |
Target: 5'- cCAAGuccAGGUUGUUGUACaGGUCGAGCu -3' miRNA: 3'- uGUUU---UUCAACGACGUGcUCAGCUCG- -5' |
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11329 | 5' | -47.4 | NC_003084.1 | + | 83828 | 0.69 | 0.98827 |
Target: 5'- cGCAuguAGAGc-GCUuuaacugguccGCugGAGUCGGGCa -3' miRNA: 3'- -UGUu--UUUCaaCGA-----------CGugCUCAGCUCG- -5' |
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11329 | 5' | -47.4 | NC_003084.1 | + | 81990 | 0.75 | 0.823092 |
Target: 5'- -------uUUGgUGCACGAGUUGAGCg -3' miRNA: 3'- uguuuuucAACgACGUGCUCAGCUCG- -5' |
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11329 | 5' | -47.4 | NC_003084.1 | + | 75801 | 0.69 | 0.98827 |
Target: 5'- uGCAGAAcga-GCUGUACGAG-CGGGUc -3' miRNA: 3'- -UGUUUUucaaCGACGUGCUCaGCUCG- -5' |
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11329 | 5' | -47.4 | NC_003084.1 | + | 69405 | 0.66 | 0.999101 |
Target: 5'- cCAGAAGGUUGUcgGCA-GAGUUGAuGUc -3' miRNA: 3'- uGUUUUUCAACGa-CGUgCUCAGCU-CG- -5' |
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11329 | 5' | -47.4 | NC_003084.1 | + | 68795 | 0.77 | 0.742858 |
Target: 5'- aACAcuGGGUgg--GCACGAGUCGGGCu -3' miRNA: 3'- -UGUuuUUCAacgaCGUGCUCAGCUCG- -5' |
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11329 | 5' | -47.4 | NC_003084.1 | + | 65710 | 0.74 | 0.882692 |
Target: 5'- -gGAcAAGUUGggGCugGGGUUGAGCu -3' miRNA: 3'- ugUUuUUCAACgaCGugCUCAGCUCG- -5' |
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11329 | 5' | -47.4 | NC_003084.1 | + | 61179 | 0.66 | 0.998344 |
Target: 5'- cCGAAGAGUUGguggaCUGCAucgaucCGAGUacgaGAGCc -3' miRNA: 3'- uGUUUUUCAAC-----GACGU------GCUCAg---CUCG- -5' |
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11329 | 5' | -47.4 | NC_003084.1 | + | 59851 | 0.66 | 0.998344 |
Target: 5'- gGCGAGGAGguccgcgcGCUGCACucuAGcuaUCGAGCc -3' miRNA: 3'- -UGUUUUUCaa------CGACGUGc--UC---AGCUCG- -5' |
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11329 | 5' | -47.4 | NC_003084.1 | + | 55913 | 0.66 | 0.998344 |
Target: 5'- gACAGGAAGgcGCUGgA--GGUgGAGCg -3' miRNA: 3'- -UGUUUUUCaaCGACgUgcUCAgCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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