Results 41 - 60 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11335 | 3' | -53.2 | NC_003084.1 | + | 82189 | 0.69 | 0.797123 |
Target: 5'- ---aUUAGCACCGCCAA--ACGGUUCu -3' miRNA: 3'- uuacAAUCGUGGUGGUUgcUGCCGGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 9407 | 0.69 | 0.787589 |
Target: 5'- cGAUG-UAGCACCACCuguaGcCGaGCCCc -3' miRNA: 3'- -UUACaAUCGUGGUGGuug-CuGC-CGGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 16611 | 0.7 | 0.777902 |
Target: 5'- ----cUAGCAacuuuUCACCucCGGCGGCCCc -3' miRNA: 3'- uuacaAUCGU-----GGUGGuuGCUGCCGGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 36197 | 0.7 | 0.76807 |
Target: 5'- ------cGCACCGCCAACuGGUGGUCCa -3' miRNA: 3'- uuacaauCGUGGUGGUUG-CUGCCGGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 71974 | 0.7 | 0.737817 |
Target: 5'- --aGgcGGCGCuCACCAACGuCGGUUCu -3' miRNA: 3'- uuaCaaUCGUG-GUGGUUGCuGCCGGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 25730 | 0.71 | 0.717124 |
Target: 5'- cGAUGUauGCAgCACCA---GCGGCCCg -3' miRNA: 3'- -UUACAauCGUgGUGGUugcUGCCGGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 31539 | 0.71 | 0.69611 |
Target: 5'- aGGUGUUuauccGguCCGCCAACaGugGGUCCa -3' miRNA: 3'- -UUACAAu----CguGGUGGUUG-CugCCGGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 49078 | 0.71 | 0.685509 |
Target: 5'- aAAUGUUAGCACCGuauacggaggguCCAcuuuCGugGGgCCg -3' miRNA: 3'- -UUACAAUCGUGGU------------GGUu---GCugCCgGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 33523 | 0.72 | 0.621232 |
Target: 5'- cAAUGU--GCACC-CgGACGuGCGGCCCa -3' miRNA: 3'- -UUACAauCGUGGuGgUUGC-UGCCGGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 68811 | 0.73 | 0.578432 |
Target: 5'- ----cUAGCACCACCGuuauCGGCCCc -3' miRNA: 3'- uuacaAUCGUGGUGGUugcuGCCGGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 68737 | 0.74 | 0.557253 |
Target: 5'- uGUGUUAGCACgACCGAC-ACcgGGUCCa -3' miRNA: 3'- uUACAAUCGUGgUGGUUGcUG--CCGGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 60436 | 0.74 | 0.5562 |
Target: 5'- aAAUGUgAGCcCCACCGcugcagaACGugGGCCUu -3' miRNA: 3'- -UUACAaUCGuGGUGGU-------UGCugCCGGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 49163 | 0.74 | 0.525929 |
Target: 5'- aAAUGUUAGCACCACaAAUGuugGGUCCa -3' miRNA: 3'- -UUACAAUCGUGGUGgUUGCug-CCGGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 49333 | 0.74 | 0.525929 |
Target: 5'- aAAUGUUAGCACCACaAAUGuugGGUCCa -3' miRNA: 3'- -UUACAAUCGUGGUGgUUGCug-CCGGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 49248 | 0.74 | 0.525929 |
Target: 5'- aAAUGUUAGCACCACaAAUGuugGGUCCa -3' miRNA: 3'- -UUACAAUCGUGGUGgUUGCug-CCGGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 68675 | 0.74 | 0.525929 |
Target: 5'- aAAUGUUAGCACCACaAAUGuugGGUCCa -3' miRNA: 3'- -UUACAAUCGUGGUGgUUGCug-CCGGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 25499 | 0.75 | 0.485258 |
Target: 5'- uAUGUUugcgauacAGCugUACCAACGcacCGGCCCg -3' miRNA: 3'- uUACAA--------UCGugGUGGUUGCu--GCCGGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 68567 | 0.75 | 0.475323 |
Target: 5'- -uUGUagcUAGCACCACaAACaACGGCCCc -3' miRNA: 3'- uuACA---AUCGUGGUGgUUGcUGCCGGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 77228 | 0.75 | 0.455764 |
Target: 5'- -uUGUUGGgGaaGCCAgcACGGCGGCCCu -3' miRNA: 3'- uuACAAUCgUggUGGU--UGCUGCCGGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 31946 | 0.77 | 0.365087 |
Target: 5'- --gGUUGGCACCACCG-CGGgcuCGGCCg -3' miRNA: 3'- uuaCAAUCGUGGUGGUuGCU---GCCGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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