miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11335 3' -53.2 NC_003084.1 + 37800 0.78 0.356729
Target:  5'- ---uUUAGCACCGCaAAUGugGGCCCc -3'
miRNA:   3'- uuacAAUCGUGGUGgUUGCugCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 37962 0.66 0.937878
Target:  5'- --aGUUAGC-CCaACCAA-GACgGGUCCa -3'
miRNA:   3'- uuaCAAUCGuGG-UGGUUgCUG-CCGGG- -5'
11335 3' -53.2 NC_003084.1 + 39107 0.66 0.914994
Target:  5'- ----cUGGCAgCACCGAuucaccccgagcuCGuGCGGCCCg -3'
miRNA:   3'- uuacaAUCGUgGUGGUU-------------GC-UGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 44165 0.66 0.932705
Target:  5'- -----gAGCGCCgcauugaugACCAGCG-CGGCuCCa -3'
miRNA:   3'- uuacaaUCGUGG---------UGGUUGCuGCCG-GG- -5'
11335 3' -53.2 NC_003084.1 + 46405 0.68 0.833517
Target:  5'- gAAUGUUAcGCACCGCacucuCGAcCGGUCUa -3'
miRNA:   3'- -UUACAAU-CGUGGUGguu--GCU-GCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 46969 0.67 0.881909
Target:  5'- --cGUUAaGCAgCAgUCAACGugGGCaCCg -3'
miRNA:   3'- uuaCAAU-CGUgGU-GGUUGCugCCG-GG- -5'
11335 3' -53.2 NC_003084.1 + 48202 0.68 0.858727
Target:  5'- cGGUGgUAGCACCACUccuCGACGcacacCCCa -3'
miRNA:   3'- -UUACaAUCGUGGUGGuu-GCUGCc----GGG- -5'
11335 3' -53.2 NC_003084.1 + 49078 0.71 0.685509
Target:  5'- aAAUGUUAGCACCGuauacggaggguCCAcuuuCGugGGgCCg -3'
miRNA:   3'- -UUACAAUCGUGGU------------GGUu---GCugCCgGG- -5'
11335 3' -53.2 NC_003084.1 + 49163 0.74 0.525929
Target:  5'- aAAUGUUAGCACCACaAAUGuugGGUCCa -3'
miRNA:   3'- -UUACAAUCGUGGUGgUUGCug-CCGGG- -5'
11335 3' -53.2 NC_003084.1 + 49248 0.74 0.525929
Target:  5'- aAAUGUUAGCACCACaAAUGuugGGUCCa -3'
miRNA:   3'- -UUACAAUCGUGGUGgUUGCug-CCGGG- -5'
11335 3' -53.2 NC_003084.1 + 49249 0.98 0.018641
Target:  5'- aAAUGUUAGCACCACCAACuACGGCCCc -3'
miRNA:   3'- -UUACAAUCGUGGUGGUUGcUGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 49333 0.74 0.525929
Target:  5'- aAAUGUUAGCACCACaAAUGuugGGUCCa -3'
miRNA:   3'- -UUACAAUCGUGGUGgUUGCug-CCGGG- -5'
11335 3' -53.2 NC_003084.1 + 49334 1.09 0.003352
Target:  5'- aAAUGUUAGCACCACCAACGACGGCCCc -3'
miRNA:   3'- -UUACAAUCGUGGUGGUUGCUGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 49418 0.98 0.018641
Target:  5'- aAAUGUUAGCACCACCAACuACGGCCCc -3'
miRNA:   3'- -UUACAAUCGUGGUGGUUGcUGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 49503 0.9 0.062158
Target:  5'- aAAUGcUAGCACCACCAACuACGGCCCc -3'
miRNA:   3'- -UUACaAUCGUGGUGGUUGcUGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 49584 0.89 0.075714
Target:  5'- gAAUGcUAGCACgACUAACGACGGCCCc -3'
miRNA:   3'- -UUACaAUCGUGgUGGUUGCUGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 49673 0.78 0.324659
Target:  5'- aAAUGUUGGCACCACCAccccagcucACcgguACGGCUCa -3'
miRNA:   3'- -UUACAAUCGUGGUGGU---------UGc---UGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 51457 0.67 0.889155
Target:  5'- -----cAGCACCGguccaccuUCAACcACGGCCCa -3'
miRNA:   3'- uuacaaUCGUGGU--------GGUUGcUGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 60436 0.74 0.5562
Target:  5'- aAAUGUgAGCcCCACCGcugcagaACGugGGCCUu -3'
miRNA:   3'- -UUACAaUCGuGGUGGU-------UGCugCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 61003 0.68 0.842133
Target:  5'- -----aAGCACCACCgAACGACcgcuuguaccaGGCUCu -3'
miRNA:   3'- uuacaaUCGUGGUGG-UUGCUG-----------CCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.