miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11335 3' -53.2 NC_003084.1 + 1109 0.66 0.921568
Target:  5'- ---uUUAGCAUCACCAGu--CGGCCg -3'
miRNA:   3'- uuacAAUCGUGGUGGUUgcuGCCGGg -5'
11335 3' -53.2 NC_003084.1 + 1294 0.68 0.842133
Target:  5'- ------cGCGuCCACCAcucuaGCGugGGCCUg -3'
miRNA:   3'- uuacaauCGU-GGUGGU-----UGCugCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 6903 0.69 0.797123
Target:  5'- ----aUGGaCugCGCCAACuGGCGGCCa -3'
miRNA:   3'- uuacaAUC-GugGUGGUUG-CUGCCGGg -5'
11335 3' -53.2 NC_003084.1 + 7015 0.68 0.833517
Target:  5'- -----cAGCACCACCGuaucccACcACGGUCCa -3'
miRNA:   3'- uuacaaUCGUGGUGGU------UGcUGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 9407 0.69 0.787589
Target:  5'- cGAUG-UAGCACCACCuguaGcCGaGCCCc -3'
miRNA:   3'- -UUACaAUCGUGGUGGuug-CuGC-CGGG- -5'
11335 3' -53.2 NC_003084.1 + 15758 0.67 0.881909
Target:  5'- cAUGUU-GCGCCACCugAACG-CGGacaCCa -3'
miRNA:   3'- uUACAAuCGUGGUGG--UUGCuGCCg--GG- -5'
11335 3' -53.2 NC_003084.1 + 16611 0.7 0.777902
Target:  5'- ----cUAGCAacuuuUCACCucCGGCGGCCCc -3'
miRNA:   3'- uuacaAUCGU-----GGUGGuuGCUGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 16931 0.66 0.937878
Target:  5'- --aGUgAGCAcgaguCCACCucCGAUGaGCCCg -3'
miRNA:   3'- uuaCAaUCGU-----GGUGGuuGCUGC-CGGG- -5'
11335 3' -53.2 NC_003084.1 + 20812 0.67 0.889155
Target:  5'- -----cGGCACgCAaacuCCAGCGcccaGCGGCCCa -3'
miRNA:   3'- uuacaaUCGUG-GU----GGUUGC----UGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 22284 0.68 0.836988
Target:  5'- cGUGcUGGUaaaaacuuuaaccucACCACCAACGuuCGGCCa -3'
miRNA:   3'- uUACaAUCG---------------UGGUGGUUGCu-GCCGGg -5'
11335 3' -53.2 NC_003084.1 + 25499 0.75 0.485258
Target:  5'- uAUGUUugcgauacAGCugUACCAACGcacCGGCCCg -3'
miRNA:   3'- uUACAA--------UCGugGUGGUUGCu--GCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 25730 0.71 0.717124
Target:  5'- cGAUGUauGCAgCACCA---GCGGCCCg -3'
miRNA:   3'- -UUACAauCGUgGUGGUugcUGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 27065 0.66 0.932705
Target:  5'- -----aAGCGCUACCAgugguuACGGauGCCCg -3'
miRNA:   3'- uuacaaUCGUGGUGGU------UGCUgcCGGG- -5'
11335 3' -53.2 NC_003084.1 + 30401 0.69 0.806492
Target:  5'- cAGUGUgAGUcgagGCCACCAuGCGACGGUg- -3'
miRNA:   3'- -UUACAaUCG----UGGUGGU-UGCUGCCGgg -5'
11335 3' -53.2 NC_003084.1 + 31539 0.71 0.69611
Target:  5'- aGGUGUUuauccGguCCGCCAACaGugGGUCCa -3'
miRNA:   3'- -UUACAAu----CguGGUGGUUG-CugCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 31946 0.77 0.365087
Target:  5'- --gGUUGGCACCACCG-CGGgcuCGGCCg -3'
miRNA:   3'- uuaCAAUCGUGGUGGUuGCU---GCCGGg -5'
11335 3' -53.2 NC_003084.1 + 32649 0.68 0.874418
Target:  5'- -cUGUacccauCACCACCGaacAUGACGGCUCg -3'
miRNA:   3'- uuACAauc---GUGGUGGU---UGCUGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 33523 0.72 0.621232
Target:  5'- cAAUGU--GCACC-CgGACGuGCGGCCCa -3'
miRNA:   3'- -UUACAauCGUGGuGgUUGC-UGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 34246 0.68 0.842133
Target:  5'- cGUGUUGGCcauugcagguCCACuCGGCGaaGCGGCCg -3'
miRNA:   3'- uUACAAUCGu---------GGUG-GUUGC--UGCCGGg -5'
11335 3' -53.2 NC_003084.1 + 36197 0.7 0.76807
Target:  5'- ------cGCACCGCCAACuGGUGGUCCa -3'
miRNA:   3'- uuacaauCGUGGUGGUUG-CUGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.