miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11335 3' -53.2 NC_003084.1 + 49334 1.09 0.003352
Target:  5'- aAAUGUUAGCACCACCAACGACGGCCCc -3'
miRNA:   3'- -UUACAAUCGUGGUGGUUGCUGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 68507 1.06 0.005344
Target:  5'- -cUGUUAGCACCACCAACGACGGCCCc -3'
miRNA:   3'- uuACAAUCGUGGUGGUUGCUGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 49418 0.98 0.018641
Target:  5'- aAAUGUUAGCACCACCAACuACGGCCCc -3'
miRNA:   3'- -UUACAAUCGUGGUGGUUGcUGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 49249 0.98 0.018641
Target:  5'- aAAUGUUAGCACCACCAACuACGGCCCc -3'
miRNA:   3'- -UUACAAUCGUGGUGGUUGcUGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 68682 0.97 0.020331
Target:  5'- cAGUGUUAGCACCACCGACaACGGCCCc -3'
miRNA:   3'- -UUACAAUCGUGGUGGUUGcUGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 68425 0.94 0.034153
Target:  5'- -uUGUUGGCACCACCGACuACGGCCCc -3'
miRNA:   3'- uuACAAUCGUGGUGGUUGcUGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 49503 0.9 0.062158
Target:  5'- aAAUGcUAGCACCACCAACuACGGCCCc -3'
miRNA:   3'- -UUACaAUCGUGGUGGUUGcUGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 49584 0.89 0.075714
Target:  5'- gAAUGcUAGCACgACUAACGACGGCCCc -3'
miRNA:   3'- -UUACaAUCGUGgUGGUUGCUGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 49673 0.78 0.324659
Target:  5'- aAAUGUUGGCACCACCAccccagcucACcgguACGGCUCa -3'
miRNA:   3'- -UUACAAUCGUGGUGGU---------UGc---UGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 37800 0.78 0.356729
Target:  5'- ---uUUAGCACCGCaAAUGugGGCCCc -3'
miRNA:   3'- uuacAAUCGUGGUGgUUGCugCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 31946 0.77 0.365087
Target:  5'- --gGUUGGCACCACCG-CGGgcuCGGCCg -3'
miRNA:   3'- uuaCAAUCGUGGUGGUuGCU---GCCGGg -5'
11335 3' -53.2 NC_003084.1 + 77228 0.75 0.455764
Target:  5'- -uUGUUGGgGaaGCCAgcACGGCGGCCCu -3'
miRNA:   3'- uuACAAUCgUggUGGU--UGCUGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 68567 0.75 0.475323
Target:  5'- -uUGUagcUAGCACCACaAACaACGGCCCc -3'
miRNA:   3'- uuACA---AUCGUGGUGgUUGcUGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 25499 0.75 0.485258
Target:  5'- uAUGUUugcgauacAGCugUACCAACGcacCGGCCCg -3'
miRNA:   3'- uUACAA--------UCGugGUGGUUGCu--GCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 49333 0.74 0.525929
Target:  5'- aAAUGUUAGCACCACaAAUGuugGGUCCa -3'
miRNA:   3'- -UUACAAUCGUGGUGgUUGCug-CCGGG- -5'
11335 3' -53.2 NC_003084.1 + 49248 0.74 0.525929
Target:  5'- aAAUGUUAGCACCACaAAUGuugGGUCCa -3'
miRNA:   3'- -UUACAAUCGUGGUGgUUGCug-CCGGG- -5'
11335 3' -53.2 NC_003084.1 + 49163 0.74 0.525929
Target:  5'- aAAUGUUAGCACCACaAAUGuugGGUCCa -3'
miRNA:   3'- -UUACAAUCGUGGUGgUUGCug-CCGGG- -5'
11335 3' -53.2 NC_003084.1 + 68675 0.74 0.525929
Target:  5'- aAAUGUUAGCACCACaAAUGuugGGUCCa -3'
miRNA:   3'- -UUACAAUCGUGGUGgUUGCug-CCGGG- -5'
11335 3' -53.2 NC_003084.1 + 60436 0.74 0.5562
Target:  5'- aAAUGUgAGCcCCACCGcugcagaACGugGGCCUu -3'
miRNA:   3'- -UUACAaUCGuGGUGGU-------UGCugCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 68737 0.74 0.557253
Target:  5'- uGUGUUAGCACgACCGAC-ACcgGGUCCa -3'
miRNA:   3'- uUACAAUCGUGgUGGUUGcUG--CCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.