miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11335 3' -53.2 NC_003084.1 + 63732 0.68 0.858727
Target:  5'- --cGUUuccAGCACCAgCAGCGGauGCCg -3'
miRNA:   3'- uuaCAA---UCGUGGUgGUUGCUgcCGGg -5'
11335 3' -53.2 NC_003084.1 + 25730 0.71 0.717124
Target:  5'- cGAUGUauGCAgCACCA---GCGGCCCg -3'
miRNA:   3'- -UUACAauCGUgGUGGUugcUGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 71974 0.7 0.737817
Target:  5'- --aGgcGGCGCuCACCAACGuCGGUUCu -3'
miRNA:   3'- uuaCaaUCGUG-GUGGUUGCuGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 16611 0.7 0.777902
Target:  5'- ----cUAGCAacuuuUCACCucCGGCGGCCCc -3'
miRNA:   3'- uuacaAUCGU-----GGUGGuuGCUGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 9407 0.69 0.787589
Target:  5'- cGAUG-UAGCACCACCuguaGcCGaGCCCc -3'
miRNA:   3'- -UUACaAUCGUGGUGGuug-CuGC-CGGG- -5'
11335 3' -53.2 NC_003084.1 + 30401 0.69 0.806492
Target:  5'- cAGUGUgAGUcgagGCCACCAuGCGACGGUg- -3'
miRNA:   3'- -UUACAaUCG----UGGUGGU-UGCUGCCGgg -5'
11335 3' -53.2 NC_003084.1 + 7015 0.68 0.833517
Target:  5'- -----cAGCACCACCGuaucccACcACGGUCCa -3'
miRNA:   3'- uuacaaUCGUGGUGGU------UGcUGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 1294 0.68 0.842133
Target:  5'- ------cGCGuCCACCAcucuaGCGugGGCCUg -3'
miRNA:   3'- uuacaauCGU-GGUGGU-----UGCugCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 61003 0.68 0.842133
Target:  5'- -----aAGCACCACCgAACGACcgcuuguaccaGGCUCu -3'
miRNA:   3'- uuacaaUCGUGGUGG-UUGCUG-----------CCGGG- -5'
11335 3' -53.2 NC_003084.1 + 49078 0.71 0.685509
Target:  5'- aAAUGUUAGCACCGuauacggaggguCCAcuuuCGugGGgCCg -3'
miRNA:   3'- -UUACAAUCGUGGU------------GGUu---GCugCCgGG- -5'
11335 3' -53.2 NC_003084.1 + 68811 0.73 0.578432
Target:  5'- ----cUAGCACCACCGuuauCGGCCCc -3'
miRNA:   3'- uuacaAUCGUGGUGGUugcuGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 60436 0.74 0.5562
Target:  5'- aAAUGUgAGCcCCACCGcugcagaACGugGGCCUu -3'
miRNA:   3'- -UUACAaUCGuGGUGGU-------UGCugCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 68682 0.97 0.020331
Target:  5'- cAGUGUUAGCACCACCGACaACGGCCCc -3'
miRNA:   3'- -UUACAAUCGUGGUGGUUGcUGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 68425 0.94 0.034153
Target:  5'- -uUGUUGGCACCACCGACuACGGCCCc -3'
miRNA:   3'- uuACAAUCGUGGUGGUUGcUGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 37800 0.78 0.356729
Target:  5'- ---uUUAGCACCGCaAAUGugGGCCCc -3'
miRNA:   3'- uuacAAUCGUGGUGgUUGCugCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 77228 0.75 0.455764
Target:  5'- -uUGUUGGgGaaGCCAgcACGGCGGCCCu -3'
miRNA:   3'- uuACAAUCgUggUGGU--UGCUGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 68567 0.75 0.475323
Target:  5'- -uUGUagcUAGCACCACaAACaACGGCCCc -3'
miRNA:   3'- uuACA---AUCGUGGUGgUUGcUGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 49163 0.74 0.525929
Target:  5'- aAAUGUUAGCACCACaAAUGuugGGUCCa -3'
miRNA:   3'- -UUACAAUCGUGGUGgUUGCug-CCGGG- -5'
11335 3' -53.2 NC_003084.1 + 49248 0.74 0.525929
Target:  5'- aAAUGUUAGCACCACaAAUGuugGGUCCa -3'
miRNA:   3'- -UUACAAUCGUGGUGgUUGCug-CCGGG- -5'
11335 3' -53.2 NC_003084.1 + 49333 0.74 0.525929
Target:  5'- aAAUGUUAGCACCACaAAUGuugGGUCCa -3'
miRNA:   3'- -UUACAAUCGUGGUGgUUGCug-CCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.