miRNA display CGI


Results 41 - 60 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11336 3' -54.2 NC_003084.1 + 25730 0.7 0.681674
Target:  5'- cGAUGUauGCAgCACCA---GCGGCCCg -3'
miRNA:   3'- -UUACGauCGUgGUGGUugaUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 53117 0.7 0.670994
Target:  5'- cGGUGCUaccaccauuuauAGCACCACCGuACUGCGcagugcacCCCa -3'
miRNA:   3'- -UUACGA------------UCGUGGUGGU-UGAUGCc-------GGG- -5'
11336 3' -54.2 NC_003084.1 + 37710 0.7 0.670994
Target:  5'- cGGUGC-AGUACCACCA--UACGaGCCUc -3'
miRNA:   3'- -UUACGaUCGUGGUGGUugAUGC-CGGG- -5'
11336 3' -54.2 NC_003084.1 + 33523 0.7 0.670994
Target:  5'- cAAUGU--GCACC-CgGACgUGCGGCCCa -3'
miRNA:   3'- -UUACGauCGUGGuGgUUG-AUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 77228 0.7 0.670994
Target:  5'- -uUGUUGGgGaaGCCAGCacgGCGGCCCu -3'
miRNA:   3'- uuACGAUCgUggUGGUUGa--UGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 36202 0.7 0.670994
Target:  5'- --aGCcccGCACCGCCAACUgGUGGUCCa -3'
miRNA:   3'- uuaCGau-CGUGGUGGUUGA-UGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 82201 0.7 0.660279
Target:  5'- cGGUGCaucaaaauUAGCACCGCCAA--ACGGUUCu -3'
miRNA:   3'- -UUACG--------AUCGUGGUGGUUgaUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 47624 0.71 0.621566
Target:  5'- aAGUGC-AGCGCCACCAgcaugaaccacucucGCacgcgcuuggugUACGGUCCa -3'
miRNA:   3'- -UUACGaUCGUGGUGGU---------------UG------------AUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 51463 0.72 0.574444
Target:  5'- --aGCUcacAGCACCGguccaccuUCAACcACGGCCCa -3'
miRNA:   3'- uuaCGA---UCGUGGU--------GGUUGaUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 68737 0.72 0.553273
Target:  5'- uGUGUUAGCACgACCGAC-ACcgGGUCCa -3'
miRNA:   3'- uUACGAUCGUGgUGGUUGaUG--CCGGG- -5'
11336 3' -54.2 NC_003084.1 + 39108 0.72 0.539636
Target:  5'- ---uCUGGCAgCACCGAUucaccccgagcucgUGCGGCCCg -3'
miRNA:   3'- uuacGAUCGUgGUGGUUG--------------AUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 29230 0.73 0.5117
Target:  5'- cGUGCUAaCGCgCACCAAUcgUACGGCCg -3'
miRNA:   3'- uUACGAUcGUG-GUGGUUG--AUGCCGGg -5'
11336 3' -54.2 NC_003084.1 + 25494 0.73 0.481388
Target:  5'- -uUGCgauacAGCugUACCAACgcacCGGCCCg -3'
miRNA:   3'- uuACGa----UCGugGUGGUUGau--GCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 96500 0.74 0.461672
Target:  5'- --aGCUAGCGCCACgAACgcucGCCCa -3'
miRNA:   3'- uuaCGAUCGUGGUGgUUGaugcCGGG- -5'
11336 3' -54.2 NC_003084.1 + 7011 0.74 0.43292
Target:  5'- --aGCUcAGCACCACCGuaucccACcACGGUCCa -3'
miRNA:   3'- uuaCGA-UCGUGGUGGU------UGaUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 26933 0.75 0.405239
Target:  5'- --aGCUGGUuuCCGugguCCAGCUACGGUCCg -3'
miRNA:   3'- uuaCGAUCGu-GGU----GGUUGAUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 22284 0.77 0.332372
Target:  5'- cGUGCUGGUaaaaacuuuaaccucACCACCAACguuCGGCCa -3'
miRNA:   3'- uUACGAUCG---------------UGGUGGUUGau-GCCGGg -5'
11336 3' -54.2 NC_003084.1 + 31946 0.77 0.313832
Target:  5'- --gGUUGGCACCACCGcggGCU-CGGCCg -3'
miRNA:   3'- uuaCGAUCGUGGUGGU---UGAuGCCGGg -5'
11336 3' -54.2 NC_003084.1 + 68675 0.78 0.284692
Target:  5'- aAAUGUUAGCACCACaaAugUugGGUCCa -3'
miRNA:   3'- -UUACGAUCGUGGUGg-UugAugCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 49248 0.78 0.284692
Target:  5'- aAAUGUUAGCACCACaaAugUugGGUCCa -3'
miRNA:   3'- -UUACGAUCGUGGUGg-UugAugCCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.