miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11336 3' -54.2 NC_003084.1 + 37145 0.66 0.886801
Target:  5'- --cGCUuugacGGauucuauCCACCAACUACGGaCCa -3'
miRNA:   3'- uuaCGA-----UCgu-----GGUGGUUGAUGCCgGG- -5'
11336 3' -54.2 NC_003084.1 + 37437 0.66 0.871882
Target:  5'- cGAUGUUGGUACCACUauacuggaGACUuuGGCaCUg -3'
miRNA:   3'- -UUACGAUCGUGGUGG--------UUGAugCCG-GG- -5'
11336 3' -54.2 NC_003084.1 + 37710 0.7 0.670994
Target:  5'- cGGUGC-AGUACCACCA--UACGaGCCUc -3'
miRNA:   3'- -UUACGaUCGUGGUGGUugAUGC-CGGG- -5'
11336 3' -54.2 NC_003084.1 + 39108 0.72 0.539636
Target:  5'- ---uCUGGCAgCACCGAUucaccccgagcucgUGCGGCCCg -3'
miRNA:   3'- uuacGAUCGUgGUGGUUG--------------AUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 40107 0.67 0.821654
Target:  5'- -uUGC-AGCuCCACCAGCU-C-GCCCg -3'
miRNA:   3'- uuACGaUCGuGGUGGUUGAuGcCGGG- -5'
11336 3' -54.2 NC_003084.1 + 42474 0.66 0.89389
Target:  5'- --cGCUGGauucuCAUCACCAAgUACgGGCuCCa -3'
miRNA:   3'- uuaCGAUC-----GUGGUGGUUgAUG-CCG-GG- -5'
11336 3' -54.2 NC_003084.1 + 43404 0.66 0.887521
Target:  5'- aGGUGCUcuucGGUACCGCgAACaagcgugaaucgaagGCGGUCCc -3'
miRNA:   3'- -UUACGA----UCGUGGUGgUUGa--------------UGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 46468 0.69 0.74444
Target:  5'- uGGUGCgcgaauacAGC-UCGCCAACUG-GGCCCg -3'
miRNA:   3'- -UUACGa-------UCGuGGUGGUUGAUgCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 47624 0.71 0.621566
Target:  5'- aAGUGC-AGCGCCACCAgcaugaaccacucucGCacgcgcuuggugUACGGUCCa -3'
miRNA:   3'- -UUACGaUCGUGGUGGU---------------UG------------AUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 47746 0.66 0.900726
Target:  5'- --cGUUAacucGCGCCACCAAgugcaaagUUGCGGCUUg -3'
miRNA:   3'- uuaCGAU----CGUGGUGGUU--------GAUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 49163 0.78 0.284692
Target:  5'- aAAUGUUAGCACCACaaAugUugGGUCCa -3'
miRNA:   3'- -UUACGAUCGUGGUGg-UugAugCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 49248 0.78 0.284692
Target:  5'- aAAUGUUAGCACCACaaAugUugGGUCCa -3'
miRNA:   3'- -UUACGAUCGUGGUGg-UugAugCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 49249 1.04 0.00495
Target:  5'- aAAUGUUAGCACCACCAACUACGGCCCc -3'
miRNA:   3'- -UUACGAUCGUGGUGGUUGAUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 49333 0.78 0.284692
Target:  5'- aAAUGUUAGCACCACaaAugUugGGUCCa -3'
miRNA:   3'- -UUACGAUCGUGGUGg-UugAugCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 49334 0.96 0.018338
Target:  5'- aAAUGUUAGCACCACCAACgACGGCCCc -3'
miRNA:   3'- -UUACGAUCGUGGUGGUUGaUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 49418 1.04 0.00495
Target:  5'- aAAUGUUAGCACCACCAACUACGGCCCc -3'
miRNA:   3'- -UUACGAUCGUGGUGGUUGAUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 49503 1.09 0.002456
Target:  5'- aAAUGCUAGCACCACCAACUACGGCCCc -3'
miRNA:   3'- -UUACGAUCGUGGUGGUUGAUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 49584 0.88 0.061276
Target:  5'- gAAUGCUAGCACgACUAACgACGGCCCc -3'
miRNA:   3'- -UUACGAUCGUGgUGGUUGaUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 49673 0.82 0.165784
Target:  5'- aAAUGUUGGCACCACCAccccagcucaccGgUACGGCUCa -3'
miRNA:   3'- -UUACGAUCGUGGUGGU------------UgAUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 51463 0.72 0.574444
Target:  5'- --aGCUcacAGCACCGguccaccuUCAACcACGGCCCa -3'
miRNA:   3'- uuaCGA---UCGUGGU--------GGUUGaUGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.