miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11336 3' -54.2 NC_003084.1 + 2528 0.7 0.702888
Target:  5'- --cGCUAGCAgCACCcACUacACGGUaaCCg -3'
miRNA:   3'- uuaCGAUCGUgGUGGuUGA--UGCCG--GG- -5'
11336 3' -54.2 NC_003084.1 + 4522 0.7 0.692308
Target:  5'- --aGCUuGUACC-CCAACauUGCGGCCa -3'
miRNA:   3'- uuaCGAuCGUGGuGGUUG--AUGCCGGg -5'
11336 3' -54.2 NC_003084.1 + 4647 0.69 0.764607
Target:  5'- cAAUGUUggGGUACa---AGCUGCGGCCCa -3'
miRNA:   3'- -UUACGA--UCGUGguggUUGAUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 6558 0.69 0.734188
Target:  5'- --cGCUAGaucCGCCGCCAcgACccACGGCUCg -3'
miRNA:   3'- uuaCGAUC---GUGGUGGU--UGa-UGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 6907 0.67 0.856013
Target:  5'- --cGagaUGGaCugCGCCAACUgGCGGCCa -3'
miRNA:   3'- uuaCg--AUC-GugGUGGUUGA-UGCCGGg -5'
11336 3' -54.2 NC_003084.1 + 7011 0.74 0.43292
Target:  5'- --aGCUcAGCACCACCGuaucccACcACGGUCCa -3'
miRNA:   3'- uuaCGA-UCGUGGUGGU------UGaUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 8466 0.69 0.74444
Target:  5'- uGGUGCUAGCACCGCaGAUUcCGcGCUa -3'
miRNA:   3'- -UUACGAUCGUGGUGgUUGAuGC-CGGg -5'
11336 3' -54.2 NC_003084.1 + 10509 0.69 0.723839
Target:  5'- -cUGCUccaAGCACCccucgGCCAGCUGgagcguguUGGCCUg -3'
miRNA:   3'- uuACGA---UCGUGG-----UGGUUGAU--------GCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 20825 0.67 0.836662
Target:  5'- cAUGCaAGCGCaacggcacgcaaacuCCAGCgcccaGCGGCCCa -3'
miRNA:   3'- uUACGaUCGUGgu-------------GGUUGa----UGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 22284 0.77 0.332372
Target:  5'- cGUGCUGGUaaaaacuuuaaccucACCACCAACguuCGGCCa -3'
miRNA:   3'- uUACGAUCG---------------UGGUGGUUGau-GCCGGg -5'
11336 3' -54.2 NC_003084.1 + 25494 0.73 0.481388
Target:  5'- -uUGCgauacAGCugUACCAACgcacCGGCCCg -3'
miRNA:   3'- uuACGa----UCGugGUGGUUGau--GCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 25730 0.7 0.681674
Target:  5'- cGAUGUauGCAgCACCA---GCGGCCCg -3'
miRNA:   3'- -UUACGauCGUgGUGGUugaUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 26933 0.75 0.405239
Target:  5'- --aGCUGGUuuCCGugguCCAGCUACGGUCCg -3'
miRNA:   3'- uuaCGAUCGu-GGU----GGUUGAUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 29230 0.73 0.5117
Target:  5'- cGUGCUAaCGCgCACCAAUcgUACGGCCg -3'
miRNA:   3'- uUACGAUcGUG-GUGGUUG--AUGCCGGg -5'
11336 3' -54.2 NC_003084.1 + 30401 0.69 0.713402
Target:  5'- gGAUGCgguGCACCuCCAACUcgGGCaCCu -3'
miRNA:   3'- -UUACGau-CGUGGuGGUUGAugCCG-GG- -5'
11336 3' -54.2 NC_003084.1 + 31946 0.77 0.313832
Target:  5'- --gGUUGGCACCACCGcggGCU-CGGCCg -3'
miRNA:   3'- uuaCGAUCGUGGUGGU---UGAuGCCGGg -5'
11336 3' -54.2 NC_003084.1 + 33523 0.7 0.670994
Target:  5'- cAAUGU--GCACC-CgGACgUGCGGCCCa -3'
miRNA:   3'- -UUACGauCGUGGuGgUUG-AUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 35242 0.69 0.734188
Target:  5'- aGGUGgUAGCACCACuugagCAugUGCGGUgucaCCg -3'
miRNA:   3'- -UUACgAUCGUGGUG-----GUugAUGCCG----GG- -5'
11336 3' -54.2 NC_003084.1 + 35373 0.7 0.702888
Target:  5'- cAUGCUcaaguGGUGCUACCAcCUcGCGGUCCa -3'
miRNA:   3'- uUACGA-----UCGUGGUGGUuGA-UGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 36202 0.7 0.670994
Target:  5'- --aGCcccGCACCGCCAACUgGUGGUCCa -3'
miRNA:   3'- uuaCGau-CGUGGUGGUUGA-UGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.