miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11336 3' -54.2 NC_003084.1 + 75430 0.68 0.774501
Target:  5'- -uUGUgAGCACCACaaAugUugGGUCCa -3'
miRNA:   3'- uuACGaUCGUGGUGg-UugAugCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 25730 0.7 0.681674
Target:  5'- cGAUGUauGCAgCACCA---GCGGCCCg -3'
miRNA:   3'- -UUACGauCGUgGUGGUugaUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 4522 0.7 0.692308
Target:  5'- --aGCUuGUACC-CCAACauUGCGGCCa -3'
miRNA:   3'- uuaCGAuCGUGGuGGUUG--AUGCCGGg -5'
11336 3' -54.2 NC_003084.1 + 2528 0.7 0.702888
Target:  5'- --cGCUAGCAgCACCcACUacACGGUaaCCg -3'
miRNA:   3'- uuaCGAUCGUgGUGGuUGA--UGCCG--GG- -5'
11336 3' -54.2 NC_003084.1 + 6558 0.69 0.734188
Target:  5'- --cGCUAGaucCGCCGCCAcgACccACGGCUCg -3'
miRNA:   3'- uuaCGAUC---GUGGUGGU--UGa-UGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 35242 0.69 0.734188
Target:  5'- aGGUGgUAGCACCACuugagCAugUGCGGUgucaCCg -3'
miRNA:   3'- -UUACgAUCGUGGUG-----GUugAUGCCG----GG- -5'
11336 3' -54.2 NC_003084.1 + 8466 0.69 0.74444
Target:  5'- uGGUGCUAGCACCGCaGAUUcCGcGCUa -3'
miRNA:   3'- -UUACGAUCGUGGUGgUUGAuGC-CGGg -5'
11336 3' -54.2 NC_003084.1 + 46468 0.69 0.74444
Target:  5'- uGGUGCgcgaauacAGC-UCGCCAACUG-GGCCCg -3'
miRNA:   3'- -UUACGa-------UCGuGGUGGUUGAUgCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 91207 0.69 0.764607
Target:  5'- cGGUGC-AGCuau-CCAACcACGGCCCg -3'
miRNA:   3'- -UUACGaUCGugguGGUUGaUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 77228 0.7 0.670994
Target:  5'- -uUGUUGGgGaaGCCAGCacgGCGGCCCu -3'
miRNA:   3'- uuACGAUCgUggUGGUUGa--UGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 29230 0.73 0.5117
Target:  5'- cGUGCUAaCGCgCACCAAUcgUACGGCCg -3'
miRNA:   3'- uUACGAUcGUG-GUGGUUG--AUGCCGGg -5'
11336 3' -54.2 NC_003084.1 + 96500 0.74 0.461672
Target:  5'- --aGCUAGCGCCACgAACgcucGCCCa -3'
miRNA:   3'- uuaCGAUCGUGGUGgUUGaugcCGGG- -5'
11336 3' -54.2 NC_003084.1 + 68682 0.95 0.020003
Target:  5'- cAGUGUUAGCACCACCGACaACGGCCCc -3'
miRNA:   3'- -UUACGAUCGUGGUGGUUGaUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 68507 0.93 0.029123
Target:  5'- -cUGUUAGCACCACCAACgACGGCCCc -3'
miRNA:   3'- uuACGAUCGUGGUGGUUGaUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 68809 0.84 0.119796
Target:  5'- --aGCUAGCACCACCGuuauCGGCCCc -3'
miRNA:   3'- uuaCGAUCGUGGUGGUugauGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 68571 0.84 0.119796
Target:  5'- --aGCUAGCACCACaAACaACGGCCCc -3'
miRNA:   3'- uuaCGAUCGUGGUGgUUGaUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 49163 0.78 0.284692
Target:  5'- aAAUGUUAGCACCACaaAugUugGGUCCa -3'
miRNA:   3'- -UUACGAUCGUGGUGg-UugAugCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 49248 0.78 0.284692
Target:  5'- aAAUGUUAGCACCACaaAugUugGGUCCa -3'
miRNA:   3'- -UUACGAUCGUGGUGg-UugAugCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 49333 0.78 0.284692
Target:  5'- aAAUGUUAGCACCACaaAugUugGGUCCa -3'
miRNA:   3'- -UUACGAUCGUGGUGg-UugAugCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 7011 0.74 0.43292
Target:  5'- --aGCUcAGCACCACCGuaucccACcACGGUCCa -3'
miRNA:   3'- uuaCGA-UCGUGGUGGU------UGaUGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.