miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11336 3' -54.2 NC_003084.1 + 49503 1.09 0.002456
Target:  5'- aAAUGCUAGCACCACCAACUACGGCCCc -3'
miRNA:   3'- -UUACGAUCGUGGUGGUUGAUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 49418 1.04 0.00495
Target:  5'- aAAUGUUAGCACCACCAACUACGGCCCc -3'
miRNA:   3'- -UUACGAUCGUGGUGGUUGAUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 49249 1.04 0.00495
Target:  5'- aAAUGUUAGCACCACCAACUACGGCCCc -3'
miRNA:   3'- -UUACGAUCGUGGUGGUUGAUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 68425 1 0.00913
Target:  5'- -uUGUUGGCACCACCGACUACGGCCCc -3'
miRNA:   3'- uuACGAUCGUGGUGGUUGAUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 49334 0.96 0.018338
Target:  5'- aAAUGUUAGCACCACCAACgACGGCCCc -3'
miRNA:   3'- -UUACGAUCGUGGUGGUUGaUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 68682 0.95 0.020003
Target:  5'- cAGUGUUAGCACCACCGACaACGGCCCc -3'
miRNA:   3'- -UUACGAUCGUGGUGGUUGaUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 68507 0.93 0.029123
Target:  5'- -cUGUUAGCACCACCAACgACGGCCCc -3'
miRNA:   3'- uuACGAUCGUGGUGGUUGaUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 49584 0.88 0.061276
Target:  5'- gAAUGCUAGCACgACUAACgACGGCCCc -3'
miRNA:   3'- -UUACGAUCGUGgUGGUUGaUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 68809 0.84 0.119796
Target:  5'- --aGCUAGCACCACCGuuauCGGCCCc -3'
miRNA:   3'- uuaCGAUCGUGGUGGUugauGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 68571 0.84 0.119796
Target:  5'- --aGCUAGCACCACaAACaACGGCCCc -3'
miRNA:   3'- uuaCGAUCGUGGUGgUUGaUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 49673 0.82 0.165784
Target:  5'- aAAUGUUGGCACCACCAccccagcucaccGgUACGGCUCa -3'
miRNA:   3'- -UUACGAUCGUGGUGGU------------UgAUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 49333 0.78 0.284692
Target:  5'- aAAUGUUAGCACCACaaAugUugGGUCCa -3'
miRNA:   3'- -UUACGAUCGUGGUGg-UugAugCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 49248 0.78 0.284692
Target:  5'- aAAUGUUAGCACCACaaAugUugGGUCCa -3'
miRNA:   3'- -UUACGAUCGUGGUGg-UugAugCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 49163 0.78 0.284692
Target:  5'- aAAUGUUAGCACCACaaAugUugGGUCCa -3'
miRNA:   3'- -UUACGAUCGUGGUGg-UugAugCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 68675 0.78 0.284692
Target:  5'- aAAUGUUAGCACCACaaAugUugGGUCCa -3'
miRNA:   3'- -UUACGAUCGUGGUGg-UugAugCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 31946 0.77 0.313832
Target:  5'- --gGUUGGCACCACCGcggGCU-CGGCCg -3'
miRNA:   3'- uuaCGAUCGUGGUGGU---UGAuGCCGGg -5'
11336 3' -54.2 NC_003084.1 + 22284 0.77 0.332372
Target:  5'- cGUGCUGGUaaaaacuuuaaccucACCACCAACguuCGGCCa -3'
miRNA:   3'- uUACGAUCG---------------UGGUGGUUGau-GCCGGg -5'
11336 3' -54.2 NC_003084.1 + 26933 0.75 0.405239
Target:  5'- --aGCUGGUuuCCGugguCCAGCUACGGUCCg -3'
miRNA:   3'- uuaCGAUCGu-GGU----GGUUGAUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 7011 0.74 0.43292
Target:  5'- --aGCUcAGCACCACCGuaucccACcACGGUCCa -3'
miRNA:   3'- uuaCGA-UCGUGGUGGU------UGaUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 96500 0.74 0.461672
Target:  5'- --aGCUAGCGCCACgAACgcucGCCCa -3'
miRNA:   3'- uuaCGAUCGUGGUGgUUGaugcCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.