Results 21 - 40 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11336 | 3' | -54.2 | NC_003084.1 | + | 68682 | 0.95 | 0.020003 |
Target: 5'- cAGUGUUAGCACCACCGACaACGGCCCc -3' miRNA: 3'- -UUACGAUCGUGGUGGUUGaUGCCGGG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 68507 | 0.93 | 0.029123 |
Target: 5'- -cUGUUAGCACCACCAACgACGGCCCc -3' miRNA: 3'- uuACGAUCGUGGUGGUUGaUGCCGGG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 68809 | 0.84 | 0.119796 |
Target: 5'- --aGCUAGCACCACCGuuauCGGCCCc -3' miRNA: 3'- uuaCGAUCGUGGUGGUugauGCCGGG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 68571 | 0.84 | 0.119796 |
Target: 5'- --aGCUAGCACCACaAACaACGGCCCc -3' miRNA: 3'- uuaCGAUCGUGGUGgUUGaUGCCGGG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 49163 | 0.78 | 0.284692 |
Target: 5'- aAAUGUUAGCACCACaaAugUugGGUCCa -3' miRNA: 3'- -UUACGAUCGUGGUGg-UugAugCCGGG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 49248 | 0.78 | 0.284692 |
Target: 5'- aAAUGUUAGCACCACaaAugUugGGUCCa -3' miRNA: 3'- -UUACGAUCGUGGUGg-UugAugCCGGG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 49333 | 0.78 | 0.284692 |
Target: 5'- aAAUGUUAGCACCACaaAugUugGGUCCa -3' miRNA: 3'- -UUACGAUCGUGGUGg-UugAugCCGGG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 7011 | 0.74 | 0.43292 |
Target: 5'- --aGCUcAGCACCACCGuaucccACcACGGUCCa -3' miRNA: 3'- uuaCGA-UCGUGGUGGU------UGaUGCCGGG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 96500 | 0.74 | 0.461672 |
Target: 5'- --aGCUAGCGCCACgAACgcucGCCCa -3' miRNA: 3'- uuaCGAUCGUGGUGgUUGaugcCGGG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 35242 | 0.69 | 0.734188 |
Target: 5'- aGGUGgUAGCACCACuugagCAugUGCGGUgucaCCg -3' miRNA: 3'- -UUACgAUCGUGGUG-----GUugAUGCCG----GG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 6558 | 0.69 | 0.734188 |
Target: 5'- --cGCUAGaucCGCCGCCAcgACccACGGCUCg -3' miRNA: 3'- uuaCGAUC---GUGGUGGU--UGa-UGCCGGG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 2528 | 0.7 | 0.702888 |
Target: 5'- --cGCUAGCAgCACCcACUacACGGUaaCCg -3' miRNA: 3'- uuaCGAUCGUgGUGGuUGA--UGCCG--GG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 4522 | 0.7 | 0.692308 |
Target: 5'- --aGCUuGUACC-CCAACauUGCGGCCa -3' miRNA: 3'- uuaCGAuCGUGGuGGUUG--AUGCCGGg -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 25730 | 0.7 | 0.681674 |
Target: 5'- cGAUGUauGCAgCACCA---GCGGCCCg -3' miRNA: 3'- -UUACGauCGUgGUGGUugaUGCCGGG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 77228 | 0.7 | 0.670994 |
Target: 5'- -uUGUUGGgGaaGCCAGCacgGCGGCCCu -3' miRNA: 3'- uuACGAUCgUggUGGUUGa--UGCCGGG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 29230 | 0.73 | 0.5117 |
Target: 5'- cGUGCUAaCGCgCACCAAUcgUACGGCCg -3' miRNA: 3'- uUACGAUcGUG-GUGGUUG--AUGCCGGg -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 42474 | 0.66 | 0.89389 |
Target: 5'- --cGCUGGauucuCAUCACCAAgUACgGGCuCCa -3' miRNA: 3'- uuaCGAUC-----GUGGUGGUUgAUG-CCG-GG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 49418 | 1.04 | 0.00495 |
Target: 5'- aAAUGUUAGCACCACCAACUACGGCCCc -3' miRNA: 3'- -UUACGAUCGUGGUGGUUGAUGCCGGG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 49249 | 1.04 | 0.00495 |
Target: 5'- aAAUGUUAGCACCACCAACUACGGCCCc -3' miRNA: 3'- -UUACGAUCGUGGUGGUUGAUGCCGGG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 49334 | 0.96 | 0.018338 |
Target: 5'- aAAUGUUAGCACCACCAACgACGGCCCc -3' miRNA: 3'- -UUACGAUCGUGGUGGUUGaUGCCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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