Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11336 | 5' | -48.6 | NC_003084.1 | + | 49550 | 0.73 | 0.838398 |
Target: 5'- gUGGACCCGAUGUcgGUuGUGCUcACAu -3' miRNA: 3'- -ACCUGGGUUGUAaaCAcCACGAuUGU- -5' |
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11336 | 5' | -48.6 | NC_003084.1 | + | 49145 | 0.68 | 0.974269 |
Target: 5'- uUGGuACCCGAUcg--GUGGUGUgUGACAa -3' miRNA: 3'- -ACC-UGGGUUGuaaaCACCACG-AUUGU- -5' |
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11336 | 5' | -48.6 | NC_003084.1 | + | 85684 | 0.67 | 0.989168 |
Target: 5'- aGGGCCC-GCGag-GUGGUGCa---- -3' miRNA: 3'- aCCUGGGuUGUaaaCACCACGauugu -5' |
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11336 | 5' | -48.6 | NC_003084.1 | + | 91228 | 0.67 | 0.990577 |
Target: 5'- cGGACaCCAACG--UGUGGccCUGGCGc -3' miRNA: 3'- aCCUG-GGUUGUaaACACCacGAUUGU- -5' |
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11336 | 5' | -48.6 | NC_003084.1 | + | 7151 | 0.66 | 0.99296 |
Target: 5'- gUGGA-CCGugGUgggauacgGUGGUGCUGAg- -3' miRNA: 3'- -ACCUgGGUugUAaa------CACCACGAUUgu -5' |
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11336 | 5' | -48.6 | NC_003084.1 | + | 70285 | 0.66 | 0.996284 |
Target: 5'- gUGGGcCCCGACAUggUGaccaUGGUGCg---- -3' miRNA: 3'- -ACCU-GGGUUGUAa-AC----ACCACGauugu -5' |
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11336 | 5' | -48.6 | NC_003084.1 | + | 49215 | 0.74 | 0.79118 |
Target: 5'- gUGGACCCucCGUauacGGUGCUAACAu -3' miRNA: 3'- -ACCUGGGuuGUAaacaCCACGAUUGU- -5' |
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11336 | 5' | -48.6 | NC_003084.1 | + | 68818 | 0.76 | 0.696478 |
Target: 5'- gUGGGgCCGuuGUcgGUGGUGCUAACAc -3' miRNA: 3'- -ACCUgGGUugUAaaCACCACGAUUGU- -5' |
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11336 | 5' | -48.6 | NC_003084.1 | + | 68942 | 0.77 | 0.618766 |
Target: 5'- gUGGGgCCGAUAacgGUGGUGCUAGCu -3' miRNA: 3'- -ACCUgGGUUGUaaaCACCACGAUUGu -5' |
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11336 | 5' | -48.6 | NC_003084.1 | + | 68641 | 0.8 | 0.498876 |
Target: 5'- gUGGGgCCGuCGUUgGUGGUGCUAACAg -3' miRNA: 3'- -ACCUgGGUuGUAAaCACCACGAUUGU- -5' |
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11336 | 5' | -48.6 | NC_003084.1 | + | 37930 | 0.8 | 0.488431 |
Target: 5'- gGGGCCC-ACAUUUGcGGUGCUAAa- -3' miRNA: 3'- aCCUGGGuUGUAAACaCCACGAUUgu -5' |
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11336 | 5' | -48.6 | NC_003084.1 | + | 68704 | 0.82 | 0.399643 |
Target: 5'- gUGGGgCCGuuGUUUGUGGUGCUAGCu -3' miRNA: 3'- -ACCUgGGUugUAAACACCACGAUUGu -5' |
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11336 | 5' | -48.6 | NC_003084.1 | + | 49384 | 1 | 0.033779 |
Target: 5'- gUGGACCCAACA-UUGUGGUGCUAACAu -3' miRNA: 3'- -ACCUGGGUUGUaAACACCACGAUUGU- -5' |
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11336 | 5' | -48.6 | NC_003084.1 | + | 75564 | 1.02 | 0.025057 |
Target: 5'- gUGGACCCAACAUUUGUGGUGCUcACAa -3' miRNA: 3'- -ACCUGGGUUGUAAACACCACGAuUGU- -5' |
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11336 | 5' | -48.6 | NC_003084.1 | + | 49300 | 1.1 | 0.008233 |
Target: 5'- gUGGACCCAACAUUUGUGGUGCUAACAu -3' miRNA: 3'- -ACCUGGGUUGUAAACACCACGAUUGU- -5' |
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11336 | 5' | -48.6 | NC_003084.1 | + | 49469 | 1.1 | 0.008233 |
Target: 5'- gUGGACCCAACAUUUGUGGUGCUAACAu -3' miRNA: 3'- -ACCUGGGUUGUAAACACCACGAUUGU- -5' |
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11336 | 5' | -48.6 | NC_003084.1 | + | 68559 | 0.66 | 0.996284 |
Target: 5'- gUGGGgCCGuaGUcgGUGGUGCcAACAa -3' miRNA: 3'- -ACCUgGGUugUAaaCACCACGaUUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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