miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11337 5' -47.3 NC_003084.1 + 40318 0.69 0.984411
Target:  5'- -uGGGCUGGguagcgcAUGaUGaGCACgGCCACCa -3'
miRNA:   3'- auUUCGAUU-------UACaAC-CGUGgUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 41863 0.67 0.997128
Target:  5'- uUGAGGUUc-AUGgcgUGGUAgUACCGCCg -3'
miRNA:   3'- -AUUUCGAuuUACa--ACCGUgGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 42010 0.67 0.995191
Target:  5'- aUGAGGgaAAAUcGgcGGUACUACCACg -3'
miRNA:   3'- -AUUUCgaUUUA-CaaCCGUGGUGGUGg -5'
11337 5' -47.3 NC_003084.1 + 42971 0.69 0.98461
Target:  5'- uUAAGGUgcGAUuuUUGGacaCACCACCACCa -3'
miRNA:   3'- -AUUUCGauUUAc-AACC---GUGGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 43459 0.69 0.982537
Target:  5'- --uGGCauuGUGccgcaUUGGcCACCGCCGCCa -3'
miRNA:   3'- auuUCGauuUAC-----AACC-GUGGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 46409 0.67 0.995929
Target:  5'- ---cGCUGAAUGUUacGCACCGCacucucgACCg -3'
miRNA:   3'- auuuCGAUUUACAAc-CGUGGUGg------UGG- -5'
11337 5' -47.3 NC_003084.1 + 46743 0.68 0.992306
Target:  5'- aAAAGUUGGAUGaagucGGUGCCccgguCCACCg -3'
miRNA:   3'- aUUUCGAUUUACaa---CCGUGGu----GGUGG- -5'
11337 5' -47.3 NC_003084.1 + 46880 0.67 0.995929
Target:  5'- ---uGCUcGAGUGUUuacgugcgGGCAcguucgguuCCACCACCa -3'
miRNA:   3'- auuuCGA-UUUACAA--------CCGU---------GGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 48060 0.67 0.995191
Target:  5'- ---cGUgGGGUGUgcgucgaggagUGGUGCUACCACCg -3'
miRNA:   3'- auuuCGaUUUACA-----------ACCGUGGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 49260 0.69 0.980262
Target:  5'- -cAAGCaacuuUAAAUGUUaGCACCACCAaCUa -3'
miRNA:   3'- auUUCG-----AUUUACAAcCGUGGUGGU-GG- -5'
11337 5' -47.3 NC_003084.1 + 49345 0.69 0.98461
Target:  5'- -cAAGCaacuuUAAAUGUUaGCACCACCAa- -3'
miRNA:   3'- auUUCG-----AUUUACAAcCGUGGUGGUgg -5'
11337 5' -47.3 NC_003084.1 + 49429 0.69 0.980262
Target:  5'- -cAAGCaacuuUAAAUGUUaGCACCACCAaCUa -3'
miRNA:   3'- auUUCG-----AUUUACAAcCGUGGUGGU-GG- -5'
11337 5' -47.3 NC_003084.1 + 49681 1.11 0.00946
Target:  5'- cUAAAGCUAAAUGUUGGCACCACCACCc -3'
miRNA:   3'- -AUUUCGAUUUACAACCGUGGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 49775 0.68 0.991085
Target:  5'- --uAGCUAAAg--UGaGCACCACUGCg -3'
miRNA:   3'- auuUCGAUUUacaAC-CGUGGUGGUGg -5'
11337 5' -47.3 NC_003084.1 + 52673 0.68 0.988188
Target:  5'- -cGAGCUAuacAAUGgagGGUucgggugcauACCACUACCa -3'
miRNA:   3'- auUUCGAU---UUACaa-CCG----------UGGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 53344 0.68 0.988188
Target:  5'- aAAGGUccaaUAGcgGUUGGCAaacuCCuCCACCa -3'
miRNA:   3'- aUUUCG----AUUuaCAACCGU----GGuGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 54364 0.66 0.998664
Target:  5'- gGAGGUgGAGUGgugcgacuUUGGCACUugaGCUGCCg -3'
miRNA:   3'- aUUUCGaUUUAC--------AACCGUGG---UGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 54929 0.67 0.994166
Target:  5'- cGAAGUgGAGUGgacggccgaccGGUGCUACCACCc -3'
miRNA:   3'- aUUUCGaUUUACaa---------CCGUGGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 61336 0.69 0.977772
Target:  5'- -uGAGCcacggGUUGGC-CgCACCGCCg -3'
miRNA:   3'- auUUCGauuuaCAACCGuG-GUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 63282 0.74 0.864172
Target:  5'- aUAAAGCc--GUGUcGGCACCACCgugagcACCa -3'
miRNA:   3'- -AUUUCGauuUACAaCCGUGGUGG------UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.