miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11337 5' -47.3 NC_003084.1 + 1637 0.67 0.995191
Target:  5'- aUGGAGCUGcuguGGUGUcaacauuuUGGagcugaACCGCUACCu -3'
miRNA:   3'- -AUUUCGAU----UUACA--------ACCg-----UGGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 2223 0.66 0.998368
Target:  5'- cGGGGCUGuuGGUGcUGGaCACCuCgGCCa -3'
miRNA:   3'- aUUUCGAU--UUACaACC-GUGGuGgUGG- -5'
11337 5' -47.3 NC_003084.1 + 3987 0.66 0.997902
Target:  5'- gUGGAGCUGgaGGUGgUGGUugauucggacauuuGCCACUGCUa -3'
miRNA:   3'- -AUUUCGAU--UUACaACCG--------------UGGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 10039 0.72 0.91588
Target:  5'- cGAGGUUGGcgGUgUGGUuCCGCUACCg -3'
miRNA:   3'- aUUUCGAUUuaCA-ACCGuGGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 10488 0.68 0.992306
Target:  5'- --cAGCUGGagcGUGUUGGCcugguCCAC-ACCg -3'
miRNA:   3'- auuUCGAUU---UACAACCGu----GGUGgUGG- -5'
11337 5' -47.3 NC_003084.1 + 12540 0.67 0.997128
Target:  5'- -cGAGCUGGAccccauUGcggUGGUcCCACUACCc -3'
miRNA:   3'- auUUCGAUUU------ACa--ACCGuGGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 13705 0.69 0.980262
Target:  5'- gAGGGUccAGAUGUUaGCGgCACCGCCg -3'
miRNA:   3'- aUUUCGa-UUUACAAcCGUgGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 17118 0.81 0.503438
Target:  5'- gGAAGUUuuauugaAAAUGUUGGUuCCACCGCCa -3'
miRNA:   3'- aUUUCGA-------UUUACAACCGuGGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 18604 0.72 0.928097
Target:  5'- --cAGCuUGGcgGUUcGGCaaaACCACCACCg -3'
miRNA:   3'- auuUCG-AUUuaCAA-CCG---UGGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 20105 0.67 0.994348
Target:  5'- gUAAAGUUGAccugUGGUuCCAUCACCu -3'
miRNA:   3'- -AUUUCGAUUuacaACCGuGGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 22401 0.66 0.998018
Target:  5'- ---cGCUcGAUGgagGGCcgguGCCACCgGCCa -3'
miRNA:   3'- auuuCGAuUUACaa-CCG----UGGUGG-UGG- -5'
11337 5' -47.3 NC_003084.1 + 22959 0.69 0.986489
Target:  5'- --cAGCUGAuuguUGUUGaGCGCCAaCAUCg -3'
miRNA:   3'- auuUCGAUUu---ACAAC-CGUGGUgGUGG- -5'
11337 5' -47.3 NC_003084.1 + 30541 0.69 0.982537
Target:  5'- ---cGUUcAAUGUggaccgaggGGCGCUGCCGCCa -3'
miRNA:   3'- auuuCGAuUUACAa--------CCGUGGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 31876 0.68 0.991085
Target:  5'- cAGAGC-AAGU-UUGGCGauagCACCACCg -3'
miRNA:   3'- aUUUCGaUUUAcAACCGUg---GUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 31956 0.75 0.819498
Target:  5'- ---uGCcGGAcucgGUUGGCACCACCGCg -3'
miRNA:   3'- auuuCGaUUUa---CAACCGUGGUGGUGg -5'
11337 5' -47.3 NC_003084.1 + 33978 0.72 0.91588
Target:  5'- -uGAGCUGAAUGUUgGGCAgCAgCuCCa -3'
miRNA:   3'- auUUCGAUUUACAA-CCGUgGUgGuGG- -5'
11337 5' -47.3 NC_003084.1 + 35371 0.67 0.995929
Target:  5'- ---uGCUcAAg--UGGUGCUACCACCu -3'
miRNA:   3'- auuuCGAuUUacaACCGUGGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 36002 0.66 0.998235
Target:  5'- uUGGAGCUGAAaaucGUcgaaccaucuuucGGUACCugCGCCa -3'
miRNA:   3'- -AUUUCGAUUUa---CAa------------CCGUGGugGUGG- -5'
11337 5' -47.3 NC_003084.1 + 36277 0.69 0.986489
Target:  5'- uUAGGGCcAAAUcgUGGC-CCGCUGCCg -3'
miRNA:   3'- -AUUUCGaUUUAcaACCGuGGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 37433 0.73 0.902504
Target:  5'- --uAGCc-GAUGUUGGUACCACUAUa -3'
miRNA:   3'- auuUCGauUUACAACCGUGGUGGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.