miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11337 5' -47.3 NC_003084.1 + 49681 1.11 0.00946
Target:  5'- cUAAAGCUAAAUGUUGGCACCACCACCc -3'
miRNA:   3'- -AUUUCGAUUUACAACCGUGGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 17118 0.81 0.503438
Target:  5'- gGAAGUUuuauugaAAAUGUUGGUuCCACCGCCa -3'
miRNA:   3'- aUUUCGA-------UUUACAACCGuGGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 68416 0.81 0.515247
Target:  5'- aUGAAGUguu-UGUUGGCACCACCgACUa -3'
miRNA:   3'- -AUUUCGauuuACAACCGUGGUGG-UGG- -5'
11337 5' -47.3 NC_003084.1 + 31956 0.75 0.819498
Target:  5'- ---uGCcGGAcucgGUUGGCACCACCGCg -3'
miRNA:   3'- auuuCGaUUUa---CAACCGUGGUGGUGg -5'
11337 5' -47.3 NC_003084.1 + 107399 0.75 0.828889
Target:  5'- cGAAGCUGAAca-UGGCACUgcagcgagcuACCACCg -3'
miRNA:   3'- aUUUCGAUUUacaACCGUGG----------UGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 63282 0.74 0.864172
Target:  5'- aUAAAGCc--GUGUcGGCACCACCgugagcACCa -3'
miRNA:   3'- -AUUUCGauuUACAaCCGUGGUGG------UGG- -5'
11337 5' -47.3 NC_003084.1 + 37433 0.73 0.902504
Target:  5'- --uAGCc-GAUGUUGGUACCACUAUa -3'
miRNA:   3'- auuUCGauUUACAACCGUGGUGGUGg -5'
11337 5' -47.3 NC_003084.1 + 88085 0.73 0.909336
Target:  5'- uUAGAGCcgacAcgGUUGGUcUCACCACCa -3'
miRNA:   3'- -AUUUCGau--UuaCAACCGuGGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 33978 0.72 0.91588
Target:  5'- -uGAGCUGAAUGUUgGGCAgCAgCuCCa -3'
miRNA:   3'- auUUCGAUUUACAA-CCGUgGUgGuGG- -5'
11337 5' -47.3 NC_003084.1 + 10039 0.72 0.91588
Target:  5'- cGAGGUUGGcgGUgUGGUuCCGCUACCg -3'
miRNA:   3'- aUUUCGAUUuaCA-ACCGuGGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 18604 0.72 0.928097
Target:  5'- --cAGCuUGGcgGUUcGGCaaaACCACCACCg -3'
miRNA:   3'- auuUCG-AUUuaCAA-CCG---UGGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 75956 0.72 0.933768
Target:  5'- -cGAGCUAAAccugggGUUGcGguCCACCACUa -3'
miRNA:   3'- auUUCGAUUUa-----CAAC-CguGGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 61336 0.69 0.977772
Target:  5'- -uGAGCcacggGUUGGC-CgCACCGCCg -3'
miRNA:   3'- auUUCGauuuaCAACCGuG-GUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 13705 0.69 0.980262
Target:  5'- gAGGGUccAGAUGUUaGCGgCACCGCCg -3'
miRNA:   3'- aUUUCGa-UUUACAAcCGUgGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 49429 0.69 0.980262
Target:  5'- -cAAGCaacuuUAAAUGUUaGCACCACCAaCUa -3'
miRNA:   3'- auUUCG-----AUUUACAAcCGUGGUGGU-GG- -5'
11337 5' -47.3 NC_003084.1 + 49260 0.69 0.980262
Target:  5'- -cAAGCaacuuUAAAUGUUaGCACCACCAaCUa -3'
miRNA:   3'- auUUCG-----AUUUACAAcCGUGGUGGU-GG- -5'
11337 5' -47.3 NC_003084.1 + 106264 0.69 0.981876
Target:  5'- aUGGAGCUGGGUucagcuacccgacgGUUGGCAacCCGaCACCg -3'
miRNA:   3'- -AUUUCGAUUUA--------------CAACCGU--GGUgGUGG- -5'
11337 5' -47.3 NC_003084.1 + 43459 0.69 0.982537
Target:  5'- --uGGCauuGUGccgcaUUGGcCACCGCCGCCa -3'
miRNA:   3'- auuUCGauuUAC-----AACC-GUGGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 97408 0.69 0.982537
Target:  5'- --uGGCUGAcuuUGaggGGCACCGCCAg- -3'
miRNA:   3'- auuUCGAUUu--ACaa-CCGUGGUGGUgg -5'
11337 5' -47.3 NC_003084.1 + 30541 0.69 0.982537
Target:  5'- ---cGUUcAAUGUggaccgaggGGCGCUGCCGCCa -3'
miRNA:   3'- auuuCGAuUUACAa--------CCGUGGUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.