miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11337 5' -47.3 NC_003084.1 + 99839 0.66 0.997608
Target:  5'- -cAAGCggacGUGUUGGCcgaGCCGuCCAgCCa -3'
miRNA:   3'- auUUCGauu-UACAACCG---UGGU-GGU-GG- -5'
11337 5' -47.3 NC_003084.1 + 94917 0.68 0.991085
Target:  5'- cAAGGCgauc-GUUGaGCcccacgaggGCCACCACCg -3'
miRNA:   3'- aUUUCGauuuaCAAC-CG---------UGGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 54929 0.67 0.994166
Target:  5'- cGAAGUgGAGUGgacggccgaccGGUGCUACCACCc -3'
miRNA:   3'- aUUUCGaUUUACaa---------CCGUGGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 64903 0.67 0.994258
Target:  5'- gUAGGGCggcAAAUGUUaGGUAgaguccauccuccUCACCACCu -3'
miRNA:   3'- -AUUUCGa--UUUACAA-CCGU-------------GGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 48060 0.67 0.995191
Target:  5'- ---cGUgGGGUGUgcgucgaggagUGGUGCUACCACCg -3'
miRNA:   3'- auuuCGaUUUACA-----------ACCGUGGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 96430 0.67 0.995191
Target:  5'- aGAAGCguacaGUcGcCGCCACCACCa -3'
miRNA:   3'- aUUUCGauuuaCAaCcGUGGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 100966 0.67 0.995191
Target:  5'- gAAGGCUGca-GUcacCACCACCGCCg -3'
miRNA:   3'- aUUUCGAUuuaCAaccGUGGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 41863 0.67 0.997128
Target:  5'- uUGAGGUUc-AUGgcgUGGUAgUACCGCCg -3'
miRNA:   3'- -AUUUCGAuuUACa--ACCGUgGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 94354 0.66 0.997608
Target:  5'- -cGAGUUGAAUGUggaaccGGCGgCAaCACCg -3'
miRNA:   3'- auUUCGAUUUACAa-----CCGUgGUgGUGG- -5'
11337 5' -47.3 NC_003084.1 + 98222 0.68 0.98957
Target:  5'- --cGGCgcgcgGGAUGUuggUGGCACCaaacguuGCCAUCg -3'
miRNA:   3'- auuUCGa----UUUACA---ACCGUGG-------UGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 22959 0.69 0.986489
Target:  5'- --cAGCUGAuuguUGUUGaGCGCCAaCAUCg -3'
miRNA:   3'- auuUCGAUUu---ACAAC-CGUGGUgGUGG- -5'
11337 5' -47.3 NC_003084.1 + 43459 0.69 0.982537
Target:  5'- --uGGCauuGUGccgcaUUGGcCACCGCCGCCa -3'
miRNA:   3'- auuUCGauuUAC-----AACC-GUGGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 68416 0.81 0.515247
Target:  5'- aUGAAGUguu-UGUUGGCACCACCgACUa -3'
miRNA:   3'- -AUUUCGauuuACAACCGUGGUGG-UGG- -5'
11337 5' -47.3 NC_003084.1 + 37433 0.73 0.902504
Target:  5'- --uAGCc-GAUGUUGGUACCACUAUa -3'
miRNA:   3'- auuUCGauUUACAACCGUGGUGGUGg -5'
11337 5' -47.3 NC_003084.1 + 88085 0.73 0.909336
Target:  5'- uUAGAGCcgacAcgGUUGGUcUCACCACCa -3'
miRNA:   3'- -AUUUCGau--UuaCAACCGuGGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 33978 0.72 0.91588
Target:  5'- -uGAGCUGAAUGUUgGGCAgCAgCuCCa -3'
miRNA:   3'- auUUCGAUUUACAA-CCGUgGUgGuGG- -5'
11337 5' -47.3 NC_003084.1 + 75956 0.72 0.933768
Target:  5'- -cGAGCUAAAccugggGUUGcGguCCACCACUa -3'
miRNA:   3'- auUUCGAUUUa-----CAAC-CguGGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 61336 0.69 0.977772
Target:  5'- -uGAGCcacggGUUGGC-CgCACCGCCg -3'
miRNA:   3'- auUUCGauuuaCAACCGuG-GUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 30541 0.69 0.982537
Target:  5'- ---cGUUcAAUGUggaccgaggGGCGCUGCCGCCa -3'
miRNA:   3'- auuuCGAuUUACAa--------CCGUGGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 97408 0.69 0.982537
Target:  5'- --uGGCUGAcuuUGaggGGCACCGCCAg- -3'
miRNA:   3'- auuUCGAUUu--ACaa-CCGUGGUGGUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.