Results 21 - 40 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11337 | 5' | -47.3 | NC_003084.1 | + | 61336 | 0.69 | 0.977772 |
Target: 5'- -uGAGCcacggGUUGGC-CgCACCGCCg -3' miRNA: 3'- auUUCGauuuaCAACCGuG-GUGGUGG- -5' |
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11337 | 5' | -47.3 | NC_003084.1 | + | 30541 | 0.69 | 0.982537 |
Target: 5'- ---cGUUcAAUGUggaccgaggGGCGCUGCCGCCa -3' miRNA: 3'- auuuCGAuUUACAa--------CCGUGGUGGUGG- -5' |
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11337 | 5' | -47.3 | NC_003084.1 | + | 97408 | 0.69 | 0.982537 |
Target: 5'- --uGGCUGAcuuUGaggGGCACCGCCAg- -3' miRNA: 3'- auuUCGAUUu--ACaa-CCGUGGUGGUgg -5' |
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11337 | 5' | -47.3 | NC_003084.1 | + | 43459 | 0.69 | 0.982537 |
Target: 5'- --uGGCauuGUGccgcaUUGGcCACCGCCGCCa -3' miRNA: 3'- auuUCGauuUAC-----AACC-GUGGUGGUGG- -5' |
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11337 | 5' | -47.3 | NC_003084.1 | + | 22959 | 0.69 | 0.986489 |
Target: 5'- --cAGCUGAuuguUGUUGaGCGCCAaCAUCg -3' miRNA: 3'- auuUCGAUUu---ACAAC-CGUGGUgGUGG- -5' |
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11337 | 5' | -47.3 | NC_003084.1 | + | 106264 | 0.69 | 0.981876 |
Target: 5'- aUGGAGCUGGGUucagcuacccgacgGUUGGCAacCCGaCACCg -3' miRNA: 3'- -AUUUCGAUUUA--------------CAACCGU--GGUgGUGG- -5' |
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11337 | 5' | -47.3 | NC_003084.1 | + | 40318 | 0.69 | 0.984411 |
Target: 5'- -uGGGCUGGguagcgcAUGaUGaGCACgGCCACCa -3' miRNA: 3'- auUUCGAUU-------UACaAC-CGUGgUGGUGG- -5' |
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11337 | 5' | -47.3 | NC_003084.1 | + | 42971 | 0.69 | 0.98461 |
Target: 5'- uUAAGGUgcGAUuuUUGGacaCACCACCACCa -3' miRNA: 3'- -AUUUCGauUUAc-AACC---GUGGUGGUGG- -5' |
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11337 | 5' | -47.3 | NC_003084.1 | + | 49345 | 0.69 | 0.98461 |
Target: 5'- -cAAGCaacuuUAAAUGUUaGCACCACCAa- -3' miRNA: 3'- auUUCG-----AUUUACAAcCGUGGUGGUgg -5' |
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11337 | 5' | -47.3 | NC_003084.1 | + | 36277 | 0.69 | 0.986489 |
Target: 5'- uUAGGGCcAAAUcgUGGC-CCGCUGCCg -3' miRNA: 3'- -AUUUCGaUUUAcaACCGuGGUGGUGG- -5' |
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11337 | 5' | -47.3 | NC_003084.1 | + | 53344 | 0.68 | 0.988188 |
Target: 5'- aAAGGUccaaUAGcgGUUGGCAaacuCCuCCACCa -3' miRNA: 3'- aUUUCG----AUUuaCAACCGU----GGuGGUGG- -5' |
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11337 | 5' | -47.3 | NC_003084.1 | + | 49260 | 0.69 | 0.980262 |
Target: 5'- -cAAGCaacuuUAAAUGUUaGCACCACCAaCUa -3' miRNA: 3'- auUUCG-----AUUUACAAcCGUGGUGGU-GG- -5' |
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11337 | 5' | -47.3 | NC_003084.1 | + | 49429 | 0.69 | 0.980262 |
Target: 5'- -cAAGCaacuuUAAAUGUUaGCACCACCAaCUa -3' miRNA: 3'- auUUCG-----AUUUACAAcCGUGGUGGU-GG- -5' |
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11337 | 5' | -47.3 | NC_003084.1 | + | 13705 | 0.69 | 0.980262 |
Target: 5'- gAGGGUccAGAUGUUaGCGgCACCGCCg -3' miRNA: 3'- aUUUCGa-UUUACAAcCGUgGUGGUGG- -5' |
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11337 | 5' | -47.3 | NC_003084.1 | + | 18604 | 0.72 | 0.928097 |
Target: 5'- --cAGCuUGGcgGUUcGGCaaaACCACCACCg -3' miRNA: 3'- auuUCG-AUUuaCAA-CCG---UGGUGGUGG- -5' |
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11337 | 5' | -47.3 | NC_003084.1 | + | 10039 | 0.72 | 0.91588 |
Target: 5'- cGAGGUUGGcgGUgUGGUuCCGCUACCg -3' miRNA: 3'- aUUUCGAUUuaCA-ACCGuGGUGGUGG- -5' |
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11337 | 5' | -47.3 | NC_003084.1 | + | 63282 | 0.74 | 0.864172 |
Target: 5'- aUAAAGCc--GUGUcGGCACCACCgugagcACCa -3' miRNA: 3'- -AUUUCGauuUACAaCCGUGGUGG------UGG- -5' |
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11337 | 5' | -47.3 | NC_003084.1 | + | 107399 | 0.75 | 0.828889 |
Target: 5'- cGAAGCUGAAca-UGGCACUgcagcgagcuACCACCg -3' miRNA: 3'- aUUUCGAUUUacaACCGUGG----------UGGUGG- -5' |
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11337 | 5' | -47.3 | NC_003084.1 | + | 31956 | 0.75 | 0.819498 |
Target: 5'- ---uGCcGGAcucgGUUGGCACCACCGCg -3' miRNA: 3'- auuuCGaUUUa---CAACCGUGGUGGUGg -5' |
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11337 | 5' | -47.3 | NC_003084.1 | + | 2223 | 0.66 | 0.998368 |
Target: 5'- cGGGGCUGuuGGUGcUGGaCACCuCgGCCa -3' miRNA: 3'- aUUUCGAU--UUACaACC-GUGGuGgUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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