Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11338 | 5' | -53.5 | NC_003084.1 | + | 99325 | 0.68 | 0.829252 |
Target: 5'- --gGGCACCucCCGUAUugggaggucgaauaUGCGCugcaguGGUGCg -3' miRNA: 3'- auaUCGUGGu-GGCAUG--------------ACGCG------UCACG- -5' |
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11338 | 5' | -53.5 | NC_003084.1 | + | 49765 | 0.68 | 0.823 |
Target: 5'- --gAGCACCACUGcGCaUGC-CAGUGg -3' miRNA: 3'- auaUCGUGGUGGCaUG-ACGcGUCACg -5' |
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11338 | 5' | -53.5 | NC_003084.1 | + | 93984 | 0.68 | 0.804629 |
Target: 5'- -uUGGCACCAUC-UugUGCcGCAGUccgGCg -3' miRNA: 3'- auAUCGUGGUGGcAugACG-CGUCA---CG- -5' |
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11338 | 5' | -53.5 | NC_003084.1 | + | 90319 | 0.68 | 0.801812 |
Target: 5'- ---cGCACagGCCGUACUGCucauuccaguacucGUAGUGUa -3' miRNA: 3'- auauCGUGg-UGGCAUGACG--------------CGUCACG- -5' |
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11338 | 5' | -53.5 | NC_003084.1 | + | 10857 | 0.69 | 0.785562 |
Target: 5'- --cAGCGguUCACCGUACUGUGCuuccGCa -3' miRNA: 3'- auaUCGU--GGUGGCAUGACGCGuca-CG- -5' |
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11338 | 5' | -53.5 | NC_003084.1 | + | 80738 | 0.71 | 0.667714 |
Target: 5'- -uUGGUAaucauguucaucaCACCGUAUUGCGUGGUGUa -3' miRNA: 3'- auAUCGUg------------GUGGCAUGACGCGUCACG- -5' |
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11338 | 5' | -53.5 | NC_003084.1 | + | 33630 | 0.72 | 0.59654 |
Target: 5'- --aGGCGCUuugUCGUGCaGUGCGGUGCg -3' miRNA: 3'- auaUCGUGGu--GGCAUGaCGCGUCACG- -5' |
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11338 | 5' | -53.5 | NC_003084.1 | + | 13688 | 0.74 | 0.501876 |
Target: 5'- --cGGCACCGCCGuUAC-GUGCAcauGUGCg -3' miRNA: 3'- auaUCGUGGUGGC-AUGaCGCGU---CACG- -5' |
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11338 | 5' | -53.5 | NC_003084.1 | + | 53102 | 1.11 | 0.00202 |
Target: 5'- uUAUAGCACCACCGUACUGCGCAGUGCa -3' miRNA: 3'- -AUAUCGUGGUGGCAUGACGCGUCACG- -5' |
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11338 | 5' | -53.5 | NC_003084.1 | + | 31861 | 0.66 | 0.920846 |
Target: 5'- gAUAGCACCACCGcaauCU-CGaauauGUGCu -3' miRNA: 3'- aUAUCGUGGUGGCau--GAcGCgu---CACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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