miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11348 3' -50.8 NC_003084.1 + 44177 0.66 0.978057
Target:  5'- cGuGCAACAcUCGaGCGC--CGCAUUGa -3'
miRNA:   3'- aCuCGUUGUaAGC-CGCGacGUGUAAC- -5'
11348 3' -50.8 NC_003084.1 + 96632 0.66 0.978057
Target:  5'- uUGGGCgAGCGUUCGuggcgcuagcuGCGgCUGCGCGa-- -3'
miRNA:   3'- -ACUCG-UUGUAAGC-----------CGC-GACGUGUaac -5'
11348 3' -50.8 NC_003084.1 + 102847 0.66 0.978057
Target:  5'- cUGGGCcuggacAACGUuuuuggugcugUCGGUGCU-CACAUUGg -3'
miRNA:   3'- -ACUCG------UUGUA-----------AGCCGCGAcGUGUAAC- -5'
11348 3' -50.8 NC_003084.1 + 100360 0.66 0.9726
Target:  5'- uUGuGCAGCGUUagGGCGCUGgaGCGg-- -3'
miRNA:   3'- -ACuCGUUGUAAg-CCGCGACg-UGUaac -5'
11348 3' -50.8 NC_003084.1 + 56457 0.66 0.969532
Target:  5'- aGGcGCAACAccaGGUGCUGCugGUc- -3'
miRNA:   3'- aCU-CGUUGUaagCCGCGACGugUAac -5'
11348 3' -50.8 NC_003084.1 + 57905 0.66 0.969532
Target:  5'- ---aCAGgAUUUGGCGCUGCACc--- -3'
miRNA:   3'- acucGUUgUAAGCCGCGACGUGuaac -5'
11348 3' -50.8 NC_003084.1 + 87378 0.66 0.966226
Target:  5'- cGGGCAgcaaACAUUUGGCaaGCUGgGCGa-- -3'
miRNA:   3'- aCUCGU----UGUAAGCCG--CGACgUGUaac -5'
11348 3' -50.8 NC_003084.1 + 20277 0.66 0.966226
Target:  5'- gGAGUugUGUUCGGaGCUGUACAa-- -3'
miRNA:   3'- aCUCGuuGUAAGCCgCGACGUGUaac -5'
11348 3' -50.8 NC_003084.1 + 98407 0.67 0.962675
Target:  5'- cUGAGCGAUg--CGGUGC-GCACGa-- -3'
miRNA:   3'- -ACUCGUUGuaaGCCGCGaCGUGUaac -5'
11348 3' -50.8 NC_003084.1 + 94805 0.67 0.958872
Target:  5'- gUGAGCAACAUUaCGGC-C-GUACAa-- -3'
miRNA:   3'- -ACUCGUUGUAA-GCCGcGaCGUGUaac -5'
11348 3' -50.8 NC_003084.1 + 46768 0.68 0.941033
Target:  5'- cGAGCAAUuacgUGGUGCUGCcgGCGcUGg -3'
miRNA:   3'- aCUCGUUGuaa-GCCGCGACG--UGUaAC- -5'
11348 3' -50.8 NC_003084.1 + 52891 0.68 0.935896
Target:  5'- cGAGC--CAggUGGUGCUGCGCGa-- -3'
miRNA:   3'- aCUCGuuGUaaGCCGCGACGUGUaac -5'
11348 3' -50.8 NC_003084.1 + 101746 0.68 0.924793
Target:  5'- aUGGGUAACuacUCGaCGCUGUACAUg- -3'
miRNA:   3'- -ACUCGUUGua-AGCcGCGACGUGUAac -5'
11348 3' -50.8 NC_003084.1 + 751 0.68 0.924793
Target:  5'- cGAGCAccuUGUUCaggucGCGCUGCACAUc- -3'
miRNA:   3'- aCUCGUu--GUAAGc----CGCGACGUGUAac -5'
11348 3' -50.8 NC_003084.1 + 92476 0.69 0.906065
Target:  5'- cGAGC-ACAagucggCGGCGCUGUugGgUUGa -3'
miRNA:   3'- aCUCGuUGUaa----GCCGCGACGugU-AAC- -5'
11348 3' -50.8 NC_003084.1 + 12457 0.69 0.899275
Target:  5'- gUGGGCAACGaaUUCGGgcuUGCUGgACAUg- -3'
miRNA:   3'- -ACUCGUUGU--AAGCC---GCGACgUGUAac -5'
11348 3' -50.8 NC_003084.1 + 86488 0.7 0.861393
Target:  5'- gGAGCAGCAgUUGGCGUUGgUugAUUu -3'
miRNA:   3'- aCUCGUUGUaAGCCGCGAC-GugUAAc -5'
11348 3' -50.8 NC_003084.1 + 47488 0.71 0.835739
Target:  5'- aGAGUgguuCAUgcuggUGGCGCUGCACuUUGg -3'
miRNA:   3'- aCUCGuu--GUAa----GCCGCGACGUGuAAC- -5'
11348 3' -50.8 NC_003084.1 + 106908 0.71 0.826746
Target:  5'- uUGAGCAACcagUGGUGCUGCuCGUc- -3'
miRNA:   3'- -ACUCGUUGuaaGCCGCGACGuGUAac -5'
11348 3' -50.8 NC_003084.1 + 38785 0.71 0.817548
Target:  5'- cGAGCuaugGCAUUUGuGgGCUGCACAc-- -3'
miRNA:   3'- aCUCGu---UGUAAGC-CgCGACGUGUaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.