miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11359 3' -49.9 NC_003084.1 + 36696 0.74 0.760924
Target:  5'- aUGUAauccCCACUGGUGGaacuguaAAGGUUGUGCc -3'
miRNA:   3'- -ACGU----GGUGGCCACCaa-----UUUCAACACG- -5'
11359 3' -49.9 NC_003084.1 + 37626 0.71 0.870754
Target:  5'- aGCACCACCGGaccGUUGAccguaacauGGUUGaGCu -3'
miRNA:   3'- aCGUGGUGGCCac-CAAUU---------UCAACaCG- -5'
11359 3' -49.9 NC_003084.1 + 42464 0.66 0.984746
Target:  5'- gGCACgACCGGUGcucgcGGUUaUGCg -3'
miRNA:   3'- aCGUGgUGGCCACcaauuUCAAcACG- -5'
11359 3' -49.9 NC_003084.1 + 44576 0.68 0.95518
Target:  5'- aGUACaacucuaucaugCugUGGUGGUccucauuucUGGGGUUGUGCa -3'
miRNA:   3'- aCGUG------------GugGCCACCA---------AUUUCAACACG- -5'
11359 3' -49.9 NC_003084.1 + 46316 0.73 0.780042
Target:  5'- cGC-CCACCGGUGGUUGuaccgauaaauacGcuccAGUUGcUGCu -3'
miRNA:   3'- aCGuGGUGGCCACCAAU-------------U----UCAAC-ACG- -5'
11359 3' -49.9 NC_003084.1 + 46442 0.67 0.982753
Target:  5'- gGUacaACCACCGGUGGgcgguAAGUUuuaGCu -3'
miRNA:   3'- aCG---UGGUGGCCACCaau--UUCAAca-CG- -5'
11359 3' -49.9 NC_003084.1 + 47006 0.7 0.919584
Target:  5'- cGCACgACCGGUGGUUcaaca--UGCg -3'
miRNA:   3'- aCGUGgUGGCCACCAAuuucaacACG- -5'
11359 3' -49.9 NC_003084.1 + 47305 0.66 0.991016
Target:  5'- gGCugCgGCCGGUGaGUUuAGGUg--GCg -3'
miRNA:   3'- aCGugG-UGGCCAC-CAAuUUCAacaCG- -5'
11359 3' -49.9 NC_003084.1 + 48787 0.66 0.988201
Target:  5'- ---uCCACCGGUcGUccaccAAGUUGUGCu -3'
miRNA:   3'- acguGGUGGCCAcCAau---UUCAACACG- -5'
11359 3' -49.9 NC_003084.1 + 49103 0.75 0.708556
Target:  5'- aGCGCCAcCCGGUGGU---GGUUGa-- -3'
miRNA:   3'- aCGUGGU-GGCCACCAauuUCAACacg -5'
11359 3' -49.9 NC_003084.1 + 49143 0.67 0.983572
Target:  5'- gGUACCcgAUCGGUGGUgugugacaaaUUGUGCu -3'
miRNA:   3'- aCGUGG--UGGCCACCAauuuc-----AACACG- -5'
11359 3' -49.9 NC_003084.1 + 52163 0.73 0.810024
Target:  5'- aGCACCAgUGGUGaGUU-GAGUgcgGUGUa -3'
miRNA:   3'- aCGUGGUgGCCAC-CAAuUUCAa--CACG- -5'
11359 3' -49.9 NC_003084.1 + 52609 0.66 0.984746
Target:  5'- gGCAUCGCCuucGGUGGUgacucAAGG-UGUGa -3'
miRNA:   3'- aCGUGGUGG---CCACCAa----UUUCaACACg -5'
11359 3' -49.9 NC_003084.1 + 58244 0.66 0.989684
Target:  5'- cUGCACCACga--GGUUGAAGggaagaGUGCu -3'
miRNA:   3'- -ACGUGGUGgccaCCAAUUUCaa----CACG- -5'
11359 3' -49.9 NC_003084.1 + 59920 0.71 0.862753
Target:  5'- -cCACCACCGGUGaGcucAGGUgGUGCg -3'
miRNA:   3'- acGUGGUGGCCAC-CaauUUCAaCACG- -5'
11359 3' -49.9 NC_003084.1 + 60054 0.73 0.781034
Target:  5'- cGCACCaccugagcucACCGGUGGUgguGAGUaUG-GCa -3'
miRNA:   3'- aCGUGG----------UGGCCACCAau-UUCA-ACaCG- -5'
11359 3' -49.9 NC_003084.1 + 61278 0.68 0.969746
Target:  5'- gUGCACCGagCGGUGGcgugguGGUcGUGUa -3'
miRNA:   3'- -ACGUGGUg-GCCACCaauu--UCAaCACG- -5'
11359 3' -49.9 NC_003084.1 + 62180 0.71 0.878509
Target:  5'- aGCAaCGgUGGUGGUggcggcGGUUGUGCa -3'
miRNA:   3'- aCGUgGUgGCCACCAauu---UCAACACG- -5'
11359 3' -49.9 NC_003084.1 + 64795 0.68 0.959198
Target:  5'- aGgGCCACCG-----UGAGGUUGUGCg -3'
miRNA:   3'- aCgUGGUGGCcaccaAUUUCAACACG- -5'
11359 3' -49.9 NC_003084.1 + 65701 0.69 0.94636
Target:  5'- -uCACCACCGGUGccGUUGgcAAGUcccgGUGUg -3'
miRNA:   3'- acGUGGUGGCCAC--CAAU--UUCAa---CACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.