miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11359 3' -49.9 NC_003084.1 + 651 0.67 0.98057
Target:  5'- cGCACCAUUGc-GGUUccauccucGGUUGUGCg -3'
miRNA:   3'- aCGUGGUGGCcaCCAAuu------UCAACACG- -5'
11359 3' -49.9 NC_003084.1 + 3530 1.12 0.004678
Target:  5'- gUGCACCACCGGUGGUUAAAGUUGUGCc -3'
miRNA:   3'- -ACGUGGUGGCCACCAAUUUCAACACG- -5'
11359 3' -49.9 NC_003084.1 + 3653 0.68 0.966474
Target:  5'- --aACCACCGGUGGUgcaccGUUGa-- -3'
miRNA:   3'- acgUGGUGGCCACCAauuu-CAACacg -5'
11359 3' -49.9 NC_003084.1 + 3685 0.74 0.74029
Target:  5'- cGCACCAUcagauucaCGGUGGUU-AAGcUGUGUa -3'
miRNA:   3'- aCGUGGUG--------GCCACCAAuUUCaACACG- -5'
11359 3' -49.9 NC_003084.1 + 5215 0.68 0.95518
Target:  5'- cGCACCACCGGUaGGUggaccGGUa---- -3'
miRNA:   3'- aCGUGGUGGCCA-CCAauu--UCAacacg -5'
11359 3' -49.9 NC_003084.1 + 5987 0.69 0.950902
Target:  5'- gGCAa-ACgGGUGGUgcGAG-UGUGCa -3'
miRNA:   3'- aCGUggUGgCCACCAauUUCaACACG- -5'
11359 3' -49.9 NC_003084.1 + 6365 0.7 0.919584
Target:  5'- gGCACCAUUGGacagGGUgauGGagGUGCa -3'
miRNA:   3'- aCGUGGUGGCCa---CCAauuUCaaCACG- -5'
11359 3' -49.9 NC_003084.1 + 6409 0.67 0.982332
Target:  5'- aGCuCCACCGGUGcacccuccAGUcGUGCu -3'
miRNA:   3'- aCGuGGUGGCCACcaauu---UCAaCACG- -5'
11359 3' -49.9 NC_003084.1 + 10506 0.68 0.953924
Target:  5'- uUGCACgACUGGUGGaUAGGGUggacaaugagacgaUGacUGCg -3'
miRNA:   3'- -ACGUGgUGGCCACCaAUUUCA--------------AC--ACG- -5'
11359 3' -49.9 NC_003084.1 + 12406 0.67 0.98057
Target:  5'- cGCACCACUGc------AAGUUGUGCa -3'
miRNA:   3'- aCGUGGUGGCcaccaauUUCAACACG- -5'
11359 3' -49.9 NC_003084.1 + 16745 0.69 0.94636
Target:  5'- gGgGCCGCCGGaGGUgaAAAGUUGcuagagGCa -3'
miRNA:   3'- aCgUGGUGGCCaCCAa-UUUCAACa-----CG- -5'
11359 3' -49.9 NC_003084.1 + 18460 0.66 0.984746
Target:  5'- gGC-CCGCaCGGUGGU---GGUUuUGCc -3'
miRNA:   3'- aCGuGGUG-GCCACCAauuUCAAcACG- -5'
11359 3' -49.9 NC_003084.1 + 25740 0.68 0.969746
Target:  5'- aGCACCAgCGGcccgGGUgcacgcuGGacgUGUGCg -3'
miRNA:   3'- aCGUGGUgGCCa---CCAauu----UCa--ACACG- -5'
11359 3' -49.9 NC_003084.1 + 25945 0.81 0.369484
Target:  5'- aGCACCguugGCCGGUGaa-AAAGUUGUGCa -3'
miRNA:   3'- aCGUGG----UGGCCACcaaUUUCAACACG- -5'
11359 3' -49.9 NC_003084.1 + 27066 0.71 0.870754
Target:  5'- aGCGCUACCaGUGGUUAcggaugcccGAGUUGg-- -3'
miRNA:   3'- aCGUGGUGGcCACCAAU---------UUCAACacg -5'
11359 3' -49.9 NC_003084.1 + 27755 0.71 0.878509
Target:  5'- gGCACCGuuGGUGG----AGUUGgacGCa -3'
miRNA:   3'- aCGUGGUggCCACCaauuUCAACa--CG- -5'
11359 3' -49.9 NC_003084.1 + 28408 0.66 0.991016
Target:  5'- -aUACCcgugauCCGGUGGU---GGUUGUGg -3'
miRNA:   3'- acGUGGu-----GGCCACCAauuUCAACACg -5'
11359 3' -49.9 NC_003084.1 + 29926 0.72 0.83735
Target:  5'- aGCACgACCGGUcg--GAAGUUGgUGCg -3'
miRNA:   3'- aCGUGgUGGCCAccaaUUUCAAC-ACG- -5'
11359 3' -49.9 NC_003084.1 + 33370 0.67 0.978186
Target:  5'- cGCACuCcCCGGUGag-GAAGUUGgGCc -3'
miRNA:   3'- aCGUG-GuGGCCACcaaUUUCAACaCG- -5'
11359 3' -49.9 NC_003084.1 + 33763 0.7 0.90696
Target:  5'- cGCACgACUGGgGGaUGGAGUUgaccGUGCa -3'
miRNA:   3'- aCGUGgUGGCCaCCaAUUUCAA----CACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.