miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11359 3' -49.9 NC_003084.1 + 3530 1.12 0.004678
Target:  5'- gUGCACCACCGGUGGUUAAAGUUGUGCc -3'
miRNA:   3'- -ACGUGGUGGCCACCAAUUUCAACACG- -5'
11359 3' -49.9 NC_003084.1 + 25945 0.81 0.369484
Target:  5'- aGCACCguugGCCGGUGaa-AAAGUUGUGCa -3'
miRNA:   3'- aCGUGG----UGGCCACcaaUUUCAACACG- -5'
11359 3' -49.9 NC_003084.1 + 49103 0.75 0.708556
Target:  5'- aGCGCCAcCCGGUGGU---GGUUGa-- -3'
miRNA:   3'- aCGUGGU-GGCCACCAauuUCAACacg -5'
11359 3' -49.9 NC_003084.1 + 3685 0.74 0.74029
Target:  5'- cGCACCAUcagauucaCGGUGGUU-AAGcUGUGUa -3'
miRNA:   3'- aCGUGGUG--------GCCACCAAuUUCaACACG- -5'
11359 3' -49.9 NC_003084.1 + 36696 0.74 0.760924
Target:  5'- aUGUAauccCCACUGGUGGaacuguaAAGGUUGUGCc -3'
miRNA:   3'- -ACGU----GGUGGCCACCaa-----UUUCAACACG- -5'
11359 3' -49.9 NC_003084.1 + 46316 0.73 0.780042
Target:  5'- cGC-CCACCGGUGGUUGuaccgauaaauacGcuccAGUUGcUGCu -3'
miRNA:   3'- aCGuGGUGGCCACCAAU-------------U----UCAAC-ACG- -5'
11359 3' -49.9 NC_003084.1 + 60054 0.73 0.781034
Target:  5'- cGCACCaccugagcucACCGGUGGUgguGAGUaUG-GCa -3'
miRNA:   3'- aCGUGG----------UGGCCACCAau-UUCA-ACaCG- -5'
11359 3' -49.9 NC_003084.1 + 52163 0.73 0.810024
Target:  5'- aGCACCAgUGGUGaGUU-GAGUgcgGUGUa -3'
miRNA:   3'- aCGUGGUgGCCAC-CAAuUUCAa--CACG- -5'
11359 3' -49.9 NC_003084.1 + 29926 0.72 0.83735
Target:  5'- aGCACgACCGGUcg--GAAGUUGgUGCg -3'
miRNA:   3'- aCGUGgUGGCCAccaaUUUCAAC-ACG- -5'
11359 3' -49.9 NC_003084.1 + 91565 0.72 0.858662
Target:  5'- aUGCugaACCACCGGUGGUccgcuccugcgagGUGCg -3'
miRNA:   3'- -ACG---UGGUGGCCACCAauuucaa------CACG- -5'
11359 3' -49.9 NC_003084.1 + 59920 0.71 0.862753
Target:  5'- -cCACCACCGGUGaGcucAGGUgGUGCg -3'
miRNA:   3'- acGUGGUGGCCAC-CaauUUCAaCACG- -5'
11359 3' -49.9 NC_003084.1 + 27066 0.71 0.870754
Target:  5'- aGCGCUACCaGUGGUUAcggaugcccGAGUUGg-- -3'
miRNA:   3'- aCGUGGUGGcCACCAAU---------UUCAACacg -5'
11359 3' -49.9 NC_003084.1 + 37626 0.71 0.870754
Target:  5'- aGCACCACCGGaccGUUGAccguaacauGGUUGaGCu -3'
miRNA:   3'- aCGUGGUGGCCac-CAAUU---------UCAACaCG- -5'
11359 3' -49.9 NC_003084.1 + 62180 0.71 0.878509
Target:  5'- aGCAaCGgUGGUGGUggcggcGGUUGUGCa -3'
miRNA:   3'- aCGUgGUgGCCACCAauu---UCAACACG- -5'
11359 3' -49.9 NC_003084.1 + 27755 0.71 0.878509
Target:  5'- gGCACCGuuGGUGG----AGUUGgacGCa -3'
miRNA:   3'- aCGUGGUggCCACCaauuUCAACa--CG- -5'
11359 3' -49.9 NC_003084.1 + 33763 0.7 0.90696
Target:  5'- cGCACgACUGGgGGaUGGAGUUgaccGUGCa -3'
miRNA:   3'- aCGUGgUGGCCaCCaAUUUCAA----CACG- -5'
11359 3' -49.9 NC_003084.1 + 85580 0.7 0.913408
Target:  5'- cGguCCGCUGGUGGgUGAAaUUGUGg -3'
miRNA:   3'- aCguGGUGGCCACCaAUUUcAACACg -5'
11359 3' -49.9 NC_003084.1 + 91437 0.7 0.91776
Target:  5'- cGgACCACCGGUGGUUcagcauauuccggcGAAGcuagcUGCa -3'
miRNA:   3'- aCgUGGUGGCCACCAA--------------UUUCaac--ACG- -5'
11359 3' -49.9 NC_003084.1 + 47006 0.7 0.919584
Target:  5'- cGCACgACCGGUGGUUcaaca--UGCg -3'
miRNA:   3'- aCGUGgUGGCCACCAAuuucaacACG- -5'
11359 3' -49.9 NC_003084.1 + 6365 0.7 0.919584
Target:  5'- gGCACCAUUGGacagGGUgauGGagGUGCa -3'
miRNA:   3'- aCGUGGUGGCCa---CCAauuUCaaCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.