miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11360 5' -59.4 NC_003084.1 + 49664 0.72 0.304987
Target:  5'- cACCACCACC-CCAGCU-CACCGgUAc -3'
miRNA:   3'- uUGGUGGUGGaGGUCGAgGUGGUgGU- -5'
11360 5' -59.4 NC_003084.1 + 50788 0.71 0.374556
Target:  5'- cACCAUUugCUgCAGCUaCUGCCACCGa -3'
miRNA:   3'- uUGGUGGugGAgGUCGA-GGUGGUGGU- -5'
11360 5' -59.4 NC_003084.1 + 51294 0.68 0.531885
Target:  5'- gGAgCACCA-CUCCAGCUC-ACCACa- -3'
miRNA:   3'- -UUgGUGGUgGAGGUCGAGgUGGUGgu -5'
11360 5' -59.4 NC_003084.1 + 51416 0.68 0.531885
Target:  5'- gGAgCACCA-CUCCAGCUC-ACCACa- -3'
miRNA:   3'- -UUgGUGGUgGAGGUCGAGgUGGUGgu -5'
11360 5' -59.4 NC_003084.1 + 51618 0.67 0.593197
Target:  5'- -uCCAuauCCugCUCCAuauuccGCUCCucgACCACCAg -3'
miRNA:   3'- uuGGU---GGugGAGGU------CGAGG---UGGUGGU- -5'
11360 5' -59.4 NC_003084.1 + 54485 0.72 0.327023
Target:  5'- cACCAcuCCACCUCCGGgUCgACC-CCAu -3'
miRNA:   3'- uUGGU--GGUGGAGGUCgAGgUGGuGGU- -5'
11360 5' -59.4 NC_003084.1 + 54536 0.75 0.191498
Target:  5'- -cCCACCACC-CCAGCUCCAaguCCAg -3'
miRNA:   3'- uuGGUGGUGGaGGUCGAGGUgguGGU- -5'
11360 5' -59.4 NC_003084.1 + 59243 0.69 0.482601
Target:  5'- cAACCACCACCU-CAGC-CCGCUAa-- -3'
miRNA:   3'- -UUGGUGGUGGAgGUCGaGGUGGUggu -5'
11360 5' -59.4 NC_003084.1 + 62054 0.68 0.49229
Target:  5'- cGCCACCACCaCCGuuGCUaCCACUACa- -3'
miRNA:   3'- uUGGUGGUGGaGGU--CGA-GGUGGUGgu -5'
11360 5' -59.4 NC_003084.1 + 65673 0.7 0.38292
Target:  5'- cGCCaagcuucacgaACCuCCUCCGGgUUCACCACCGg -3'
miRNA:   3'- uUGG-----------UGGuGGAGGUCgAGGUGGUGGU- -5'
11360 5' -59.4 NC_003084.1 + 68649 0.66 0.624342
Target:  5'- cGCaUACCACCUCUAGC-CCGacucgugcCCACCc -3'
miRNA:   3'- uUG-GUGGUGGAGGUCGaGGU--------GGUGGu -5'
11360 5' -59.4 NC_003084.1 + 70106 0.66 0.634747
Target:  5'- cACCACCaACCU-CAGCUCC-UCGCUc -3'
miRNA:   3'- uUGGUGG-UGGAgGUCGAGGuGGUGGu -5'
11360 5' -59.4 NC_003084.1 + 71148 0.79 0.110742
Target:  5'- cGACCGCCAgCUUCAGgUCCGCCACgCAg -3'
miRNA:   3'- -UUGGUGGUgGAGGUCgAGGUGGUG-GU- -5'
11360 5' -59.4 NC_003084.1 + 71634 0.69 0.435629
Target:  5'- cAACCAUCgggGCUUCCAGUUCCGaUACCAg -3'
miRNA:   3'- -UUGGUGG---UGGAGGUCGAGGUgGUGGU- -5'
11360 5' -59.4 NC_003084.1 + 78210 0.69 0.463507
Target:  5'- -cCCGCgUACCgUCgAGCUCCACCGCgAa -3'
miRNA:   3'- uuGGUG-GUGG-AGgUCGAGGUGGUGgU- -5'
11360 5' -59.4 NC_003084.1 + 85175 0.76 0.164222
Target:  5'- uACUACCACCgacaauuuugUUCAGCUCCACCACg- -3'
miRNA:   3'- uUGGUGGUGG----------AGGUCGAGGUGGUGgu -5'
11360 5' -59.4 NC_003084.1 + 85767 0.67 0.562316
Target:  5'- gGACCGCaaaGCCUCaauuucacGCcuggCCACCGCCAa -3'
miRNA:   3'- -UUGGUGg--UGGAGgu------CGa---GGUGGUGGU- -5'
11360 5' -59.4 NC_003084.1 + 87724 0.66 0.624343
Target:  5'- --gCACCA-CUCUAGCUCCAauucuaccCCGCCu -3'
miRNA:   3'- uugGUGGUgGAGGUCGAGGU--------GGUGGu -5'
11360 5' -59.4 NC_003084.1 + 94582 0.67 0.593197
Target:  5'- cGACCAaaaCGCgCUCCA-CUCgUACCACCAg -3'
miRNA:   3'- -UUGGUg--GUG-GAGGUcGAG-GUGGUGGU- -5'
11360 5' -59.4 NC_003084.1 + 96004 0.66 0.634747
Target:  5'- cACCAgUAUgUCCAGCUCC-UUGCCAg -3'
miRNA:   3'- uUGGUgGUGgAGGUCGAGGuGGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.