miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11360 5' -59.4 NC_003084.1 + 3276 0.68 0.531884
Target:  5'- cGCCAUCACUUCCcaagcucgaagAGCUCCGCUgguGCUg -3'
miRNA:   3'- uUGGUGGUGGAGG-----------UCGAGGUGG---UGGu -5'
11360 5' -59.4 NC_003084.1 + 3859 1.05 0.001344
Target:  5'- cAACCACCACCUCCAGCUCCACCACCAc -3'
miRNA:   3'- -UUGGUGGUGGAGGUCGAGGUGGUGGU- -5'
11360 5' -59.4 NC_003084.1 + 6377 0.68 0.515896
Target:  5'- uGACCACCACaaugUCCcguucgcgagacgauAGCUCCACCGgugcacccuCCAg -3'
miRNA:   3'- -UUGGUGGUGg---AGG---------------UCGAGGUGGU---------GGU- -5'
11360 5' -59.4 NC_003084.1 + 10157 0.68 0.541968
Target:  5'- cAGCgGCCuuUUUCAGCUCCugUGCCAu -3'
miRNA:   3'- -UUGgUGGugGAGGUCGAGGugGUGGU- -5'
11360 5' -59.4 NC_003084.1 + 12408 0.71 0.358203
Target:  5'- gGACCACCGCaauggggUCCAGCUCgCACUccuugGCCGc -3'
miRNA:   3'- -UUGGUGGUGg------AGGUCGAG-GUGG-----UGGU- -5'
11360 5' -59.4 NC_003084.1 + 15307 0.67 0.593197
Target:  5'- cAACCACCGCCacCCuGUUCgCAagcuuCCACCAg -3'
miRNA:   3'- -UUGGUGGUGGa-GGuCGAG-GU-----GGUGGU- -5'
11360 5' -59.4 NC_003084.1 + 15785 0.67 0.59734
Target:  5'- cGCgCAgCACgUCCggcauuuugguguacAGCUCCACCGCUAg -3'
miRNA:   3'- uUG-GUgGUGgAGG---------------UCGAGGUGGUGGU- -5'
11360 5' -59.4 NC_003084.1 + 17477 0.66 0.655541
Target:  5'- uGAgCGCCGggUCCAGCUCCuCCAUUAu -3'
miRNA:   3'- -UUgGUGGUggAGGUCGAGGuGGUGGU- -5'
11360 5' -59.4 NC_003084.1 + 18586 0.69 0.444815
Target:  5'- aAACCACCACCgugcgggCCAuCUCUGCuCACCu -3'
miRNA:   3'- -UUGGUGGUGGa------GGUcGAGGUG-GUGGu -5'
11360 5' -59.4 NC_003084.1 + 21543 0.66 0.645149
Target:  5'- uAACUAUCACC-CCAaa-CCACCACCGc -3'
miRNA:   3'- -UUGGUGGUGGaGGUcgaGGUGGUGGU- -5'
11360 5' -59.4 NC_003084.1 + 25480 0.66 0.634747
Target:  5'- uACCAaCGCa-CCGGC-CCGCCACCGu -3'
miRNA:   3'- uUGGUgGUGgaGGUCGaGGUGGUGGU- -5'
11360 5' -59.4 NC_003084.1 + 26379 0.71 0.374556
Target:  5'- gGGCCAUCAUCUCgGccauaucgggccGCUUCGCCACCGu -3'
miRNA:   3'- -UUGGUGGUGGAGgU------------CGAGGUGGUGGU- -5'
11360 5' -59.4 NC_003084.1 + 30280 0.66 0.655541
Target:  5'- gGugCACCGCaUCCGGcCUCaucCCACCGa -3'
miRNA:   3'- -UugGUGGUGgAGGUC-GAGgu-GGUGGU- -5'
11360 5' -59.4 NC_003084.1 + 31941 0.66 0.613944
Target:  5'- --gCACCACCgCgGGCUCgGCCGCa- -3'
miRNA:   3'- uugGUGGUGGaGgUCGAGgUGGUGgu -5'
11360 5' -59.4 NC_003084.1 + 35360 0.69 0.463507
Target:  5'- uGCUACCACCUCgCGG-UCCACCcugaGCCc -3'
miRNA:   3'- uUGGUGGUGGAG-GUCgAGGUGG----UGGu -5'
11360 5' -59.4 NC_003084.1 + 41939 0.69 0.444815
Target:  5'- cGCCGCCACCauaCCuucGUcuUCCGCCACCc -3'
miRNA:   3'- uUGGUGGUGGa--GGu--CG--AGGUGGUGGu -5'
11360 5' -59.4 NC_003084.1 + 42284 0.67 0.552113
Target:  5'- gGACCACUACaacgcCCAGUUCgGCC-CCAa -3'
miRNA:   3'- -UUGGUGGUGga---GGUCGAGgUGGuGGU- -5'
11360 5' -59.4 NC_003084.1 + 43482 0.67 0.582865
Target:  5'- cGCCGCCACCaaguguacCCAGUaa-GCCGCCAg -3'
miRNA:   3'- uUGGUGGUGGa-------GGUCGaggUGGUGGU- -5'
11360 5' -59.4 NC_003084.1 + 45693 0.67 0.607711
Target:  5'- cACCACCgaguaagcgccauuaACCUCCAGUUCCuCCGg-- -3'
miRNA:   3'- uUGGUGG---------------UGGAGGUCGAGGuGGUggu -5'
11360 5' -59.4 NC_003084.1 + 46864 0.72 0.312203
Target:  5'- uGCgGgCACgUUCGGUUCCACCACCAc -3'
miRNA:   3'- uUGgUgGUGgAGGUCGAGGUGGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.