miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11360 5' -59.4 NC_003084.1 + 3859 1.05 0.001344
Target:  5'- cAACCACCACCUCCAGCUCCACCACCAc -3'
miRNA:   3'- -UUGGUGGUGGAGGUCGAGGUGGUGGU- -5'
11360 5' -59.4 NC_003084.1 + 71148 0.79 0.110742
Target:  5'- cGACCGCCAgCUUCAGgUCCGCCACgCAg -3'
miRNA:   3'- -UUGGUGGUgGAGGUCgAGGUGGUG-GU- -5'
11360 5' -59.4 NC_003084.1 + 85175 0.76 0.164222
Target:  5'- uACUACCACCgacaauuuugUUCAGCUCCACCACg- -3'
miRNA:   3'- uUGGUGGUGG----------AGGUCGAGGUGGUGgu -5'
11360 5' -59.4 NC_003084.1 + 54536 0.75 0.191498
Target:  5'- -cCCACCACC-CCAGCUCCAaguCCAg -3'
miRNA:   3'- uuGGUGGUGGaGGUCGAGGUgguGGU- -5'
11360 5' -59.4 NC_003084.1 + 104769 0.74 0.245771
Target:  5'- cACCACCAcauCCUCCGG-UCCACCAauCCAu -3'
miRNA:   3'- uUGGUGGU---GGAGGUCgAGGUGGU--GGU- -5'
11360 5' -59.4 NC_003084.1 + 100978 0.73 0.277405
Target:  5'- cACCACCACCgCCg---CCACCACCAc -3'
miRNA:   3'- uUGGUGGUGGaGGucgaGGUGGUGGU- -5'
11360 5' -59.4 NC_003084.1 + 97215 0.73 0.284109
Target:  5'- cGGCCAUCACCaaaucggCCAGCUCgGCCaACCu -3'
miRNA:   3'- -UUGGUGGUGGa------GGUCGAGgUGG-UGGu -5'
11360 5' -59.4 NC_003084.1 + 49664 0.72 0.304987
Target:  5'- cACCACCACC-CCAGCU-CACCGgUAc -3'
miRNA:   3'- uUGGUGGUGGaGGUCGAgGUGGUgGU- -5'
11360 5' -59.4 NC_003084.1 + 46864 0.72 0.312203
Target:  5'- uGCgGgCACgUUCGGUUCCACCACCAc -3'
miRNA:   3'- uUGgUgGUGgAGGUCGAGGUGGUGGU- -5'
11360 5' -59.4 NC_003084.1 + 54485 0.72 0.327023
Target:  5'- cACCAcuCCACCUCCGGgUCgACC-CCAu -3'
miRNA:   3'- uUGGU--GGUGGAGGUCgAGgUGGuGGU- -5'
11360 5' -59.4 NC_003084.1 + 12408 0.71 0.358203
Target:  5'- gGACCACCGCaauggggUCCAGCUCgCACUccuugGCCGc -3'
miRNA:   3'- -UUGGUGGUGg------AGGUCGAG-GUGG-----UGGU- -5'
11360 5' -59.4 NC_003084.1 + 26379 0.71 0.374556
Target:  5'- gGGCCAUCAUCUCgGccauaucgggccGCUUCGCCACCGu -3'
miRNA:   3'- -UUGGUGGUGGAGgU------------CGAGGUGGUGGU- -5'
11360 5' -59.4 NC_003084.1 + 50788 0.71 0.374556
Target:  5'- cACCAUUugCUgCAGCUaCUGCCACCGa -3'
miRNA:   3'- uUGGUGGugGAgGUCGA-GGUGGUGGU- -5'
11360 5' -59.4 NC_003084.1 + 65673 0.7 0.38292
Target:  5'- cGCCaagcuucacgaACCuCCUCCGGgUUCACCACCGg -3'
miRNA:   3'- uUGG-----------UGGuGGAGGUCgAGGUGGUGGU- -5'
11360 5' -59.4 NC_003084.1 + 71634 0.69 0.435629
Target:  5'- cAACCAUCgggGCUUCCAGUUCCGaUACCAg -3'
miRNA:   3'- -UUGGUGG---UGGAGGUCGAGGUgGUGGU- -5'
11360 5' -59.4 NC_003084.1 + 41939 0.69 0.444815
Target:  5'- cGCCGCCACCauaCCuucGUcuUCCGCCACCc -3'
miRNA:   3'- uUGGUGGUGGa--GGu--CG--AGGUGGUGGu -5'
11360 5' -59.4 NC_003084.1 + 18586 0.69 0.444815
Target:  5'- aAACCACCACCgugcgggCCAuCUCUGCuCACCu -3'
miRNA:   3'- -UUGGUGGUGGa------GGUcGAGGUG-GUGGu -5'
11360 5' -59.4 NC_003084.1 + 35360 0.69 0.463507
Target:  5'- uGCUACCACCUCgCGG-UCCACCcugaGCCc -3'
miRNA:   3'- uUGGUGGUGGAG-GUCgAGGUGG----UGGu -5'
11360 5' -59.4 NC_003084.1 + 78210 0.69 0.463507
Target:  5'- -cCCGCgUACCgUCgAGCUCCACCGCgAa -3'
miRNA:   3'- uuGGUG-GUGG-AGgUCGAGGUGGUGgU- -5'
11360 5' -59.4 NC_003084.1 + 59243 0.69 0.482601
Target:  5'- cAACCACCACCU-CAGC-CCGCUAa-- -3'
miRNA:   3'- -UUGGUGGUGGAgGUCGaGGUGGUggu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.